View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_23 (Length: 325)
Name: NF7229_low_23
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 1060118 - 1059816
Alignment:
| Q |
15 |
ggacatcagttctaagaaaactcaaatgccatatcttggtcattcatagggaaattagctataaattctaatttattttgtaatccnnnnnnnn-tctga |
113 |
Q |
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| T |
1060118 |
ggacatcagttctaagaaaactcaaatgccatatcttggtcattcatagggaaattagctataaattctaatttattttgtaatccaaaaaaaaatctga |
1060019 |
T |
|
| Q |
114 |
gatttcaaactatatgaccaccgtattttgtaaattttaaataaaatgtttctgctttctttttcttcccctcttctcgtccacatcaagaattctatcg |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
1060018 |
gatttcaaactatatgaccaccctattttgtaaattttaaataaaatgtttctgctttctttttcttcccctcttctcatccacagcaagaattctatcg |
1059919 |
T |
|
| Q |
214 |
caatgtacaataaatacatgaaataaatgagatttatagttttatacccttagaagttacgaactgcggacctccctccaatggtaattaaggtgatgtc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059918 |
caatgtacaataaatacatgaaataaatgagatttatagttttatacccttagaagttacgaactgcggacctccctccaatggtaattaaggtgatgtc |
1059819 |
T |
|
| Q |
314 |
cat |
316 |
Q |
| |
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||| |
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| T |
1059818 |
cat |
1059816 |
T |
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