View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_24 (Length: 325)
Name: NF7229_low_24
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 32717008 - 32717299
Alignment:
| Q |
16 |
aagaagttgtcgaaggcgagacatatcttggaattcaaattttcagattctatggcaaatgcacctgctgctcagctgaatataccatgaagactgatcc |
115 |
Q |
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| T |
32717008 |
aagaagttgtcgaaggcgagacatatcttggaattcaaattttcagattctatggcaaatgcacctgctgctcagctgaatataccatgaagactgatcc |
32717107 |
T |
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| Q |
116 |
gcggaattcagattacgtcgttgagtttggtgcaacgagaaattttgaaccttggcgcgcagaggataaggaaagcgacgaaaggaaaaagaagagggaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32717108 |
gcggaattcagattacgtcgttgagtttggtgcaacgagaaattttgaaccttggcgcgcagaggataaggaaagcgacgaaaggaaaaagaagagggaa |
32717207 |
T |
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| Q |
216 |
gccgaagaaattggagatgcaatgaaatcgttagagaataaaaccctagattctaaaagggagatggatatccttgctgcactggatgagat |
307 |
Q |
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| T |
32717208 |
gccgaagaaattggagatgcaatgaaatcgttagagaataaaaccctagattctaaaagagagatggatatccttgctgcactggatgagat |
32717299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 34 - 307
Target Start/End: Complemental strand, 29823063 - 29822790
Alignment:
| Q |
34 |
agacatatcttggaattcaaattttcagattctatggcaaatgcacctgctgctcagctgaatataccatgaagactgatccgcggaattcagattacgt |
133 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||||||| |||||| ||||| || |
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| T |
29823063 |
agacatatctgggaattcaaattttcagattctatttcaaatgcacccggtgctcagctgaacttaccatgaagactgatccgcagaattcggattatgt |
29822964 |
T |
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| Q |
134 |
cgttgagtttggtgcaacgagaaattttgaaccttggcgcgcagaggataaggaaagcgacgaaaggaaaaagaagagggaagccgaagaaattggagat |
233 |
Q |
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| T |
29822963 |
tgttgagtctggtgctaccagaaattttgaaccttggcgcgcagaggatgaggaaaccgatgaaatgaaaaagaagagggaaaccgaagaaatgggagat |
29822864 |
T |
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| Q |
234 |
gcaatgaaatcgttagagaataaaaccctagattctaaaagggagatggatatccttgctgcactggatgagat |
307 |
Q |
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|||||||| ||||||||||||| |||||| ||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
29822863 |
gcaatgaagtcgttagagaatagaaccctggattccaaaagagagatggacatccttgctgcactggatgagat |
29822790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 34 - 307
Target Start/End: Original strand, 1838671 - 1838944
Alignment:
| Q |
34 |
agacatatcttggaattcaaattttcagattctatggcaaatgcacctgctgctcagctgaatataccatgaagactgatccgcggaattcagattacgt |
133 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||| | || || |||||| |||||||||||||||||||| |||||||||||| || |
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| T |
1838671 |
agacatatctgggaattcaaattttcagattctatttcaaatgcacccggtgttcggctgaacttaccatgaagactgatccgcagaattcagattatgt |
1838770 |
T |
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| Q |
134 |
cgttgagtttggtgcaacgagaaattttgaaccttggcgcgcagaggataaggaaagcgacgaaaggaaaaagaagagggaagccgaagaaattggagat |
233 |
Q |
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||||||| |||||| || |||||||||||||||||||| ||||||||| |||||| || |||| ||||||||||||||||||||||||||| |||||| |
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| T |
1838771 |
tgttgagtctggtgctaccagaaattttgaaccttggcgtgcagaggatgaggaaactgatgaaatgaaaaagaagagggaagccgaagaaatgggagat |
1838870 |
T |
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| Q |
234 |
gcaatgaaatcgttagagaataaaaccctagattctaaaagggagatggatatccttgctgcactggatgagat |
307 |
Q |
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|||||||| ||||||||||||| |||||| ||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
1838871 |
gcaatgaagtcgttagagaatagaaccctggattccaaaagagagatggacatccttgctgcactggatgagat |
1838944 |
T |
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