View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_25 (Length: 318)
Name: NF7229_low_25
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 24641848 - 24642114
Alignment:
| Q |
20 |
agatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
119 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24641848 |
agatctgagaaaggattatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
24641947 |
T |
|
| Q |
120 |
tgaaactgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtttaaatgggttattgtttatagcttcatacttagttcccgct |
219 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||| ||||| |||||| |||||||||||||||| ||| |
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| T |
24641948 |
tgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagttgaagct |
24642047 |
T |
|
| Q |
220 |
aaagttaccaacaaacccataagaataaaataagatttgttgttatgcgtagtcattctgttttgat |
286 |
Q |
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| T |
24642048 |
aaagtcaccaacaaacccatcagaaaaaagtaagctttgtaattacgcgtaatcattctgttttgat |
24642114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 24693221 - 24693483
Alignment:
| Q |
24 |
ctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaa |
123 |
Q |
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|||||| ||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24693221 |
ctgagagaggataatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaa |
24693320 |
T |
|
| Q |
124 |
actgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtttaaatgggttattgtttatagcttcatacttagttcccgctaaag |
223 |
Q |
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| T |
24693321 |
actgcgtgacaacatagagatgtcaaaaacagcaacatagttggagatagtggtttaaatgggttagtgtttaaagcttcatacttagttgaagctaaat |
24693420 |
T |
|
| Q |
224 |
ttaccaacaaacccataagaataaaataagatttgttgttatgcgtagtcattctgttttgat |
286 |
Q |
| |
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| |||||||||||||| | ||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
24693421 |
tcaccaacaaacccatcaaaataaaataagctttgtaattatgcgtaatcattctgttttgat |
24693483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 24720744 - 24720867
Alignment:
| Q |
1 |
atgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24720744 |
atgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctggca |
24720843 |
T |
|
| Q |
101 |
agctcatatcagctgtggatgaaa |
124 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
24720844 |
agctcatatcagctgtggatgaaa |
24720867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 58 - 253
Target Start/End: Complemental strand, 24733406 - 24733205
Alignment:
| Q |
58 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
157 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |
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| T |
24733406 |
ccaacaacaccagaaatgtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgtgtgacaacatagagatgtcaaaaacagca |
24733307 |
T |
|
| Q |
158 |
acatagttggggatagtggtttaaatgggt------tattgtttatagcttcatacttagttcccgctaaagttaccaacaaacccataagaataaaata |
251 |
Q |
| |
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||| |||||||||| ||||| |||||||| || | |||| |||||||||||| ||| | ||||||| ||||||| ||||| ||||||||||| |
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| T |
24733306 |
acaaagttggggatgatggttgaaatgggttagtactagtttttaaagcttcatacttcgttgcagctaaagccaccaacatgcccattagaataaaata |
24733207 |
T |
|
| Q |
252 |
ag |
253 |
Q |
| |
|
|| |
|
|
| T |
24733206 |
ag |
24733205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 252
Target Start/End: Original strand, 24648653 - 24648848
Alignment:
| Q |
58 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
157 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| || |||||||| ||||||||| ||| |||||| |||| | ||| ||||||||||||||||| |
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| T |
24648653 |
ccaacaacaccggagatatgaaagatatatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagta |
24648752 |
T |
|
| Q |
158 |
acatagttggggatagtggtttaaatgggttattgtttatagcttcatactt-agttcccgctaaagttaccaacaaacccataagaataaaataa |
252 |
Q |
| |
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||| ||| || | |||||| ||||||||| |||||| | ||| ||| || || | ||||||| |||||||||||||| |||||||||||| |
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| T |
24648753 |
gcattgttatgggtggtggttggaatgggttagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataa |
24648848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 24694467 - 24694569
Alignment:
| Q |
184 |
gggttattgtttatagcttcatacttagttcccgctaaagttaccaacaaacccataagaataaaataagatttgttgttatgcgtagtcattctgtttt |
283 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||| ||| ||||| |||||||||||| |
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| T |
24694467 |
gggttagtgtttaaagcttcatacttagttgaagctaaagacaccaacaaacccatcagaataaaataagctttgtaattacgcgtaatcattctgtttt |
24694566 |
T |
|
| Q |
284 |
gat |
286 |
Q |
| |
|
||| |
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|
| T |
24694567 |
gat |
24694569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 24656401 - 24656536
Alignment:
| Q |
37 |
atccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaac |
136 |
Q |
| |
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||||| ||||| ||||||||||||| ||||||||||| |||||| || | ||||||| | |||||||| ||||| ||| || |||||| |||||| |
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| T |
24656401 |
atccaaagaagtgtctcacatccaataacaccagaaaagtgaaatatgaacatagtagttaggaagctcatgtcagccatggttgcaactgcatgacaaa |
24656500 |
T |
|
| Q |
137 |
ataaagatgtcaaaaacagtaacatagttggggata |
172 |
Q |
| |
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|| || ||||||||||| |||||| |||||||| |
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| T |
24656501 |
atctagcagtcaaaaacagcaacataagtggggata |
24656536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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