View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_26 (Length: 310)
Name: NF7229_low_26
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 4139934 - 4140216
Alignment:
| Q |
6 |
gtcgaagaatatcaattattttaggataaaaggagtatcgtttcttttatttttagtccttttaaaaaatttctacaaacatttattcccaaaatgtttt |
105 |
Q |
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| T |
4139934 |
gtcgaacaatgtcaattatttttggataaaaggagtatcatttcttttgtttttagtccttctaaaaaatttctacaaacacttattcccaaaatgtttt |
4140033 |
T |
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| Q |
106 |
ccatcagcaaattaggtgttcgatgttaaaataagttaaatgtgacattgtatagagagactaaaaatgaaagatgatataattacatggatcaaaattt |
205 |
Q |
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| T |
4140034 |
ccatcagcgaattaggtgttcgatgttaaaataagttaaatgtgacattgtatagagagactaaaaatgaaagatgatataattacatggatcaaaattt |
4140133 |
T |
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| Q |
206 |
tatattaaaataagtttcgattcttataaatatatcatcttttctttttaatccttctatatagtgtcacatcacatgtgcaa |
288 |
Q |
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| T |
4140134 |
tatattaaaataagttttgattcttataaatatatcatcttttctttttggtccttctatactctgtcacatcacatgtgcaa |
4140216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 247
Target Start/End: Complemental strand, 29559899 - 29559748
Alignment:
| Q |
97 |
aaatgttttccatcagcaaattaggtgttcgatgttaaaataagttaaatgtgacattgtatagagagactaaaaatgaaagatgatataattacatgga |
196 |
Q |
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|||||||||||||||||||||| ||| | | ||||||| ||||||||| |||| | || | |||| ||||||||||||||||| |||| || | ||| |
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| T |
29559899 |
aaatgttttccatcagcaaatttggtccttgttgttaaagtaagttaaacgtgatactgaacagaggaactaaaaatgaaagatggtatatgtataggga |
29559800 |
T |
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| Q |
197 |
tcaaaattttatattaaaataag-tttcgattcttataaatatatcatcttt |
247 |
Q |
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| T |
29559799 |
ccaaaaacttattttaacataagtttttgtttcctataaatatatcatcttt |
29559748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 29857940 - 29857885
Alignment:
| Q |
130 |
gttaaaataagttaaatgtgacattgtatagagagactaaaaatgaaagatgatata |
186 |
Q |
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|||||||||||||||| |||||| | |||| ||||||||||||||||| |||||||| |
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| T |
29857940 |
gttaaaataagttaaa-gtgacactatatatagagactaaaaatgaaatatgatata |
29857885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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