View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7229_low_28 (Length: 295)

Name: NF7229_low_28
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7229_low_28
NF7229_low_28
[»] chr5 (11 HSPs)
chr5 (84-295)||(36580124-36580334)
chr5 (118-179)||(6702386-6702447)
chr5 (123-186)||(19402005-19402068)
chr5 (121-170)||(17644604-17644653)
chr5 (123-186)||(1145150-1145213)
chr5 (66-116)||(17644530-17644580)
chr5 (66-108)||(1145806-1145848)
chr5 (66-112)||(7164279-7164325)
chr5 (86-144)||(17344802-17344860)
chr5 (66-112)||(40266537-40266583)
chr5 (118-170)||(30491796-30491848)
[»] chr7 (9 HSPs)
chr7 (123-186)||(38790893-38790957)
chr7 (66-116)||(149052-149102)
chr7 (118-186)||(44552703-44552771)
chr7 (140-183)||(26502454-26502497)
chr7 (140-183)||(26590217-26590260)
chr7 (123-178)||(26604179-26604234)
chr7 (132-178)||(38792063-38792109)
chr7 (110-186)||(1537239-1537315)
chr7 (66-118)||(15819786-15819838)
[»] chr3 (17 HSPs)
chr3 (123-199)||(6162688-6162764)
chr3 (66-178)||(11342907-11343019)
chr3 (118-186)||(19866742-19866810)
chr3 (123-186)||(53827667-53827730)
chr3 (117-195)||(7666962-7667040)
chr3 (118-180)||(34086841-34086903)
chr3 (123-172)||(30533884-30533933)
chr3 (149-189)||(3860252-3860292)
chr3 (118-186)||(15042007-15042075)
chr3 (123-167)||(39688758-39688802)
chr3 (123-171)||(42947399-42947447)
chr3 (123-171)||(50663899-50663947)
chr3 (131-186)||(4969884-4969939)
chr3 (111-186)||(53814555-53814630)
chr3 (123-186)||(11343803-11343867)
chr3 (123-167)||(47064892-47064936)
chr3 (123-167)||(54528962-54529006)
[»] chr2 (7 HSPs)
chr2 (123-186)||(12967279-12967343)
chr2 (123-184)||(37893014-37893075)
chr2 (123-172)||(11712981-11713030)
chr2 (123-186)||(12969270-12969332)
chr2 (131-186)||(20685015-20685070)
chr2 (91-146)||(28360074-28360129)
chr2 (118-186)||(25678281-25678349)
[»] chr4 (13 HSPs)
chr4 (123-186)||(33164511-33164574)
chr4 (123-186)||(36172174-36172237)
chr4 (123-178)||(36174585-36174640)
chr4 (123-186)||(55523734-55523797)
chr4 (117-186)||(12572819-12572888)
chr4 (66-183)||(38676951-38677068)
chr4 (123-186)||(28798151-28798214)
chr4 (123-166)||(36217899-36217942)
chr4 (123-186)||(40450940-40451003)
chr4 (123-178)||(53265809-53265864)
chr4 (46-84)||(40361676-40361714)
chr4 (110-179)||(33161646-33161715)
chr4 (118-186)||(24972399-24972467)
[»] chr1 (11 HSPs)
chr1 (123-186)||(3792569-3792632)
chr1 (123-195)||(45691054-45691126)
chr1 (123-195)||(45691196-45691268)
chr1 (123-195)||(45691338-45691410)
chr1 (123-186)||(11821169-11821232)
chr1 (123-186)||(45688317-45688380)
chr1 (86-146)||(10884458-10884518)
chr1 (118-186)||(33403127-33403195)
chr1 (110-186)||(39650205-39650281)
chr1 (86-147)||(42883723-42883784)
chr1 (68-116)||(5603112-5603160)
[»] chr8 (5 HSPs)
chr8 (135-186)||(9448715-9448766)
chr8 (123-186)||(23558989-23559052)
chr8 (123-186)||(33220793-33220856)
chr8 (66-118)||(17875313-17875365)
chr8 (94-146)||(1349196-1349248)
[»] chr6 (5 HSPs)
chr6 (118-197)||(17436034-17436113)
chr6 (66-116)||(807132-807182)
chr6 (110-186)||(14153363-14153439)
chr6 (123-179)||(806561-806617)
chr6 (46-82)||(19405358-19405394)
[»] scaffold1763 (1 HSPs)
scaffold1763 (123-179)||(370-426)
[»] scaffold0041 (1 HSPs)
scaffold0041 (118-178)||(24366-24426)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 84 - 295
Target Start/End: Complemental strand, 36580334 - 36580124
Alignment:
Q  84 aacgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataa 183  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| | ||||| |||   ||| |||| ||| ||||   |||    
T  36580334 aacgtgagttaactcatgcaaatttaacactagtgcaagttaacatgtgtagggatattttgaacttttattttagaaataagcggaaccatttaagtaa 36580235  T
Q  184 tgaacaagattcatagatttacgtgtcaaaagcaaacttacgttgagtttgattatgctttgaagattttccnnnnnnncttattgggcttgggttatat 283  Q
    ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  36580234 tgagcagaattcatagatttacgtgtcaaaagcaaacttacgttgagtttgattatgctttgaagattttcc-ttttttcttattgggcttgggttatat 36580136  T
Q  284 ccacccttgtct 295  Q
    ||||||||||||    
T  36580135 ccacccttgtct 36580124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 6702447 - 6702386
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgg 179  Q
    |||| |||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||    
T  6702447 gcaagttaacatgcgtatgggcatttttgacttttactttgagaatgagcgaaactatttgg 6702386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 19402005 - 19402068
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||| ||| |||||||| |||||||||||||||||| ||||| |||||| ||||||    
T  19402005 ttaacatgcgtatgggcattttggacttttactttgagaatgagtgaaaccatttgggtaatga 19402068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 17644604 - 17644653
Alignment:
Q  121 aattaacatgcgtaggggtattttggatttttactttgagaatgagcgaa 170  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  17644604 aattaacatgcgtaggggtattttggacatttactttgggaatgagcgaa 17644653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 1145213 - 1145150
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    ||||||||||||| || |||||||   ||||||||| |||||||||||||| ||||||||||||    
T  1145213 ttaacatgcgtagaggcattttggtcatttactttgggaatgagcgaaactgtttggataatga 1145150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 17644530 - 17644580
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactag 116  Q
    |||||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  17644530 gcgtgatttaagtcacgcagcgtgagttaactcatgtaaatttaacactag 17644580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 1145806 - 1145848
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaattt 108  Q
    |||||||||||| |||||| |||| ||||||||||||||||||    
T  1145806 gcgtgacttaagacacgcagcgtgagttaactcatgcaaattt 1145848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 7164325 - 7164279
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaaca 112  Q
    ||||||||||||||||||  ||||  |||||||||||||||||||||    
T  7164325 gcgtgacttaagtcacgcggcgtgaattaactcatgcaaatttaaca 7164279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 17344802 - 17344860
Alignment:
Q  86 cgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtatttt 144  Q
    |||| ||||||||| ||||| |||||||||| |  | ||||||||||||||||||||||    
T  17344802 cgtgagttaactcacgcaaaattaacactagcgtgagttaacatgcgtaggggtatttt 17344860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 40266537 - 40266583
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaaca 112  Q
    ||||||||||||||||| | |||| ||||||||| ||||||||||||    
T  40266537 gcgtgacttaagtcacgtagcgtgagttaactcacgcaaatttaaca 40266583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 30491796 - 30491848
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaa 170  Q
    |||| |||||||||||||||  ||||| || |||||||||| |||||||||||    
T  30491796 gcaagttaacatgcgtagggacattttcgacttttactttgggaatgagcgaa 30491848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 38790957 - 38790893
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttacttt-gagaatgagcgaaactatttggataatga 186  Q
    ||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||    
T  38790957 ttaacatgcgtaggggtattttggacttttactttggaaaatgagcgaaaccatttggataatga 38790893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 149102 - 149052
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactag 116  Q
    ||||||||||||||| ||||||||  |||||||| ||||||||||||||||    
T  149102 gcgtgacttaagtcatgcaacgtgacttaactcacgcaaatttaacactag 149052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 44552703 - 44552771
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||| |||||||||||||| | ||||| || ||||||||||||||||||||| | | ||||| ||||||    
T  44552703 gcaagttaacatgcgtaggagcattttcgacttttactttgagaatgagcgatattgtttgggtaatga 44552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 26502454 - 26502497
Alignment:
Q  140 attttggatttttactttgagaatgagcgaaactatttggataa 183  Q
    |||||||| |||||||||||||||||||||||| |||| |||||    
T  26502454 attttggacttttactttgagaatgagcgaaaccatttagataa 26502497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 26590260 - 26590217
Alignment:
Q  140 attttggatttttactttgagaatgagcgaaactatttggataa 183  Q
    |||||||| |||||||||||||||||||||||| |||| |||||    
T  26590260 attttggacttttactttgagaatgagcgaaaccatttagataa 26590217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 26604179 - 26604234
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttg 178  Q
    |||||||||||||||| |||||  | |||||||||||||||||||| ||| |||||    
T  26604179 ttaacatgcgtaggggcattttaaacttttactttgagaatgagcggaaccatttg 26604234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 38792063 - 38792109
Alignment:
Q  132 gtaggggtattttggatttttactttgagaatgagcgaaactatttg 178  Q
    ||||||||||||| || |||||||||||||||||| ||||| |||||    
T  38792063 gtaggggtattttagacttttactttgagaatgagtgaaaccatttg 38792109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 1537239 - 1537315
Alignment:
Q  110 acactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    ||||||| |||  |||||||||| ||||| |||||| |  |||||||||||||||| ||| ||| ||||| ||||||    
T  1537239 acactagcgcatgttaacatgcgcaggggcattttgaacatttactttgagaatgaacgatactgtttgggtaatga 1537315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 15819838 - 15819786
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactagtg 118  Q
    ||||||||||| ||||||| |||| |||||||||  |||| ||||||||||||    
T  15819838 gcgtgacttaactcacgcagcgtgtgttaactcagacaaaattaacactagtg 15819786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 6162688 - 6162764
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattcatag 199  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||| ||| |||||| |||||| ||  ||||||||    
T  6162688 ttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattcatag 6162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 11343019 - 11342907
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatga 165  Q
    ||||||||||| ||||||  | || ||||| ||  ||||| ||| |||||| | |||||||||||||||||||  ||||||| |||||||||| ||||||    
T  11343019 gcgtgacttaactcacgctgcatgagttaaatcgcgcaaaattagcactagcgtaaattaacatgcgtaggggctttttggacttttactttgggaatga 11342920  T
Q  166 gcgaaactatttg 178  Q
     || ||| |||||    
T  11342919 acggaaccatttg 11342907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 19866810 - 19866742
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||| |||||||||||||||| ||||| || |||||||||| |||||||||| ||| ||||| ||||||    
T  19866810 gcaagttaacatgcgtaggggcatttttgacttttactttgggaatgagcgatactgtttgggtaatga 19866742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 53827667 - 53827730
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||||||| ||||||||  ||||||||| |||||||||| ||||||| | ||||||    
T  53827667 ttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 53827730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 7666962 - 7667040
Alignment:
Q  117 tgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattc 195  Q
    ||||| |||||||||||||||| ||||| || ||||| |||| |||||||||| ||| ||||| |||||| ||| ||||    
T  7666962 tgcaagttaacatgcgtaggggcatttttgacttttattttgggaatgagcgatactgtttgggtaatgagcaaaattc 7667040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 34086841 - 34086903
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgga 180  Q
    |||| |||||||||||||||| ||||| || |||||||||| |||||||||| ||| ||||||    
T  34086841 gcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatactgtttgga 34086903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 30533884 - 30533933
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaac 172  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||| ||||    
T  30533884 ttaacatgtgtaggggtattttggatatttactttgaaaatgagcaaaac 30533933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 3860292 - 3860252
Alignment:
Q  149 ttttactttgagaatgagcgaaactatttggataatgaaca 189  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  3860292 ttttattttgagaatgagcgaaaccatttggataatgaaca 3860252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 15042007 - 15042075
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||| |||||||||||||||| ||||| || |||||||||| |||||||||| | | ||||| ||||||    
T  15042007 gcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatattgtttgggtaatga 15042075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 39688758 - 39688802
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagc 167  Q
    |||||||| ||||||||||||| || |||||||||||||||||||    
T  39688758 ttaacatgtgtaggggtattttcgacttttactttgagaatgagc 39688802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 42947447 - 42947399
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaa 171  Q
    |||||||||||||| | |||||||| |||||||||||||||||| ||||    
T  42947447 ttaacatgcgtaggagcattttggacttttactttgagaatgagtgaaa 42947399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 50663947 - 50663899
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaa 171  Q
    |||||||||||||||| ||||||| | ||||||||| ||||||||||||    
T  50663947 ttaacatgcgtaggggcattttggttatttactttgggaatgagcgaaa 50663899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 4969939 - 4969884
Alignment:
Q  131 cgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||||| || |||||||||| ||||||||| ||| |||||| ||||||    
T  4969939 cgtaggggtattttcgacttttactttgggaatgagcggaaccatttgggtaatga 4969884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 53814555 - 53814630
Alignment:
Q  111 cactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||| ||| ||||||||||||||||| ||||||    ||||||||| ||||||||||| | |||||| ||||||    
T  53814555 cactagcgcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatga 53814630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 11343803 - 11343867
Alignment:
Q  123 ttaacatgcgta-ggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||| |||| ||||| || ||||||||||||| |||||| ||| ||||| |||||||    
T  11343803 ttaacatgcgtatggggcatttttgacttttactttgagagtgagcggaaccatttgaataatga 11343867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 47064936 - 47064892
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagc 167  Q
    |||||||||||||| | |||||||| |||||||||| ||||||||    
T  47064936 ttaacatgcgtaggagcattttggacttttactttgggaatgagc 47064892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 54528962 - 54529006
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagc 167  Q
    |||||||| ||||||||||||||||  ||||| ||||||||||||    
T  54528962 ttaacatgtgtaggggtattttggacatttacattgagaatgagc 54529006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 12967343 - 12967279
Alignment:
Q  123 ttaacatgcgtaggggtattttgga-tttttactttgagaatgagcgaaactatttggataatga 186  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| | ||||||    
T  12967343 ttaacatgcgtaggggtattttggactttttactttgagaatgagcggaaccatttaggtaatga 12967279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 37893014 - 37893075
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataat 184  Q
    ||||||||| |||||| |||||||| |||||||||| ||||||||||||| |||||| ||||    
T  37893014 ttaacatgcataggggcattttggacttttactttgggaatgagcgaaaccatttgggtaat 37893075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 11713030 - 11712981
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaac 172  Q
    ||||||| |||||||| |||||||| |||||||||| |||||||||||||    
T  11713030 ttaacatacgtaggggcattttggacttttactttgggaatgagcgaaac 11712981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 12969270 - 12969332
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||||||| |||||| | |||||||||| ||||||||| ||| |||| ||||||||    
T  12969270 ttaacatgcgtaggggcattttgaacttttactttg-gaatgagcggaaccatttagataatga 12969332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 20685070 - 20685015
Alignment:
Q  131 cgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||| ||||||||| || |||||||||||||||||||| ||| |||||| ||||||    
T  20685070 cgtaagggtattttagacttttactttgagaatgagcggaaccatttgggtaatga 20685015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 28360129 - 28360074
Alignment:
Q  91 gttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttgg 146  Q
    ||||||||| |||||||||||||||| |  | ||||||||||||| ||||||||||    
T  28360129 gttaactcacgcaaatttaacactagcgtgagttaacatgcgtagaggtattttgg 28360074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 25678349 - 25678281
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||| ||||||||  |||| | ||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  25678349 gcaagttaacatgtttaggagcatttttgacttttactttgaaaatgagcgatactgtttggataatga 25678281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 33164511 - 33164574
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||| ||| |||||| ||||||    
T  33164511 ttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatga 33164574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 36172237 - 36172174
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    ||||||| | ||||||||||||||| |||||||||| ||||||| | |||||||||| ||||||    
T  36172237 ttaacatacataggggtattttggacttttactttgggaatgagtggaactatttgggtaatga 36172174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 36174585 - 36174640
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttg 178  Q
    ||||||||||||| || ||||||||||||||||||| ||||||| ||||| |||||    
T  36174585 ttaacatgcgtagtggcattttggatttttactttgggaatgagtgaaaccatttg 36174640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 55523797 - 55523734
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||||||| ||||| || ||||||||||| ||||||||| | | ||||||||||||    
T  55523797 ttaacatgcgtaggggcattttcgacttttactttgaaaatgagcgataatgtttggataatga 55523734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 12572819 - 12572888
Alignment:
Q  117 tgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||| ||||||||||| ||||| ||||||||  |||||||||||||||| ||| ||| ||||||| ||||    
T  12572819 tgcatattaacatgcgcaggggcattttggacatttactttgagaatgaacgatactgtttggatgatga 12572888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 38677068 - 38676951
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatga 165  Q
    ||||| ||||| ||||||  |||| ||||| || |||||| ||||||| |  | || ||||||||||||| |||||||||||  |||| |||| ||||||    
T  38677068 gcgtgccttaactcacgctgcgtgagttaagtcgtgcaaaattaacaccaacgtaagttaacatgcgtagaggtattttggacatttattttgggaatga 38676969  T
Q  166 gcgaaactatttggataa 183  Q
    || ||||  |||||||||    
T  38676968 gcaaaaccgtttggataa 38676951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 28798151 - 28798214
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||| | ||||| ||||||||  |||||||||||||||||||| ||| ||||| ||||||    
T  28798151 ttaacatgtgcaggggcattttggacatttactttgagaatgagcgatactgtttgggtaatga 28798214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 36217942 - 36217899
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgag 166  Q
    |||||||||||||||| |||||||| |||||||||| |||||||    
T  36217942 ttaacatgcgtaggggcattttggacttttactttgggaatgag 36217899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 40451003 - 40450940
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||||||| ||||| || |||||||||| |||||||||| ||| ||| | ||||||    
T  40451003 ttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatactgtttaggtaatga 40450940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 53265864 - 53265809
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttg 178  Q
    |||||||||||||| | |||||||| |||||||||  ||||||||||||| |||||    
T  53265864 ttaacatgcgtaggagcattttggaattttactttaggaatgagcgaaaccatttg 53265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 40361676 - 40361714
Alignment:
Q  46 agcgtgacctaactcacgtggcgtgacttaagtcacgca 84  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  40361676 agcgtgagttaactcacgtggcgtgacttaagtcacgca 40361714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 33161715 - 33161646
Alignment:
Q  110 acactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgg 179  Q
    |||||||||||  |||||||  | ||||||||||||||| ||||||||| |||||| ||| ||| |||||    
T  33161715 acactagtgcatgttaacatatgcaggggtattttggatatttactttgggaatgaacgatactctttgg 33161646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 24972467 - 24972399
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||| ||||||||||||||||| |||| || |||||||||  |||||||||| ||| ||| | ||||||    
T  24972467 gcaagttaacatgcgtaggggtgtttttgacttttactttaggaatgagcgatactgtttaggtaatga 24972399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 3792632 - 3792569
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||| ||| |||||||| ||||||||||  ||||||||||||||||||| ||||||    
T  3792632 ttaacatgcgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatga 3792569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 45691054 - 45691126
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattc 195  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||||| |||||  |||||| ||| ||||    
T  45691054 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 45691196 - 45691268
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattc 195  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||||| |||||  |||||| ||| ||||    
T  45691196 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 45691338 - 45691410
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattc 195  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||||| |||||  |||||| ||| ||||    
T  45691338 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 11821232 - 11821169
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    ||||||||| |||| | |||||||| |||||||||| |||||| |||||| |||||||||||||    
T  11821232 ttaacatgcataggagcattttggacttttactttgggaatgaacgaaaccatttggataatga 11821169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 45688380 - 45688317
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||||||| |||||| | |||||||||| ||||||||  ||| |||||||||||||    
T  45688380 ttaacatgcgtaggggcattttgaacttttactttgggaatgagcagaaccatttggataatga 45688317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 10884458 - 10884518
Alignment:
Q  86 cgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttgg 146  Q
    |||| ||||||||| |||||||||||||||| |  | |||||||| |||||||||||||||    
T  10884458 cgtgagttaactcacgcaaatttaacactagcgtgagttaacatgtgtaggggtattttgg 10884518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 33403127 - 33403195
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||| |||||||||||||||| ||||| || ||||||||||  ||||||||| ||| ||||| ||||||    
T  33403127 gcaagttaacatgcgtaggggcattttcgacttttactttggaaatgagcgatactgtttgggtaatga 33403195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 39650281 - 39650205
Alignment:
Q  110 acactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    ||||||| |||  |||||||||||||||| ||||||||  ||||||||  ||||||||||||| |||| | ||||||    
T  39650281 acactagcgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatga 39650205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 42883723 - 42883784
Alignment:
Q  86 cgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttgga 147  Q
    |||| |||||||||||||||||||||||| | |  | |||||||| |||||| |||||||||    
T  42883723 cgtgagttaactcatgcaaatttaacacttgcgtgagttaacatgtgtagggatattttgga 42883784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 5603112 - 5603160
Alignment:
Q  68 gtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactag 116  Q
    ||||||||| || || |||||| ||||||||| ||||||||||||||||    
T  5603112 gtgacttaactcgcgtaacgtgagttaactcacgcaaatttaacactag 5603160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 9448715 - 9448766
Alignment:
Q  135 ggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||| |||||||| |||||||||||||||||| ||||| |||||||||||||    
T  9448715 ggggcattttggacttttactttgagaatgagtgaaaccatttggataatga 9448766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 23558989 - 23559052
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||||||| |||||||| |||||| |||  |||||||| ||| |||||||||||||    
T  23558989 ttaacatgcgtaggggcattttggacttttaccttggcaatgagcggaaccatttggataatga 23559052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 33220793 - 33220856
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    |||||||||||||||| |||||| | |||||||||| ||||||| ||||| |||||| ||||||    
T  33220793 ttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatga 33220856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 17875313 - 17875365
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactagtg 118  Q
    |||||| ||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  17875313 gcgtgagttaagtcacgcaacgtgagttaagtcacgcaaattaaacactagtg 17875365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 1349196 - 1349248
Alignment:
Q  94 aactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttgg 146  Q
    |||||| |||||||||||| |||||  | |||||||||||| |||||||||||    
T  1349196 aactcacgcaaatttaacaatagtgtgagttaacatgcgtaagggtattttgg 1349248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 17436113 - 17436034
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattcat 197  Q
    |||| ||||||||||||| || ||||| || |||||||||| ||||||||| ||| ||||| ||||||| ||| ||||||    
T  17436113 gcaagttaacatgcgtagaggcattttagacttttactttgggaatgagcggaaccatttgaataatgagcaaaattcat 17436034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 807132 - 807182
Alignment:
Q  66 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactag 116  Q
    |||||||||||||||||||  ||| ||||||||| ||||||||||||||||    
T  807132 gcgtgacttaagtcacgcagtgtgagttaactcacgcaaatttaacactag 807182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 14153439 - 14153363
Alignment:
Q  110 acactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 186  Q
    ||||||| |||  ||||||||||||||||||||||||   ||||||||| |||||||| |||  |||||| ||||||    
T  14153439 acactagcgcatgttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatga 14153363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 806617 - 806561
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgg 179  Q
    ||||||| |||||| ||||||| ||  |||||||||||||||||| ||||| |||||    
T  806617 ttaacatacgtaggagtattttagacatttactttgagaatgagcaaaactgtttgg 806561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 19405394 - 19405358
Alignment:
Q  46 agcgtgacctaactcacgtggcgtgacttaagtcacg 82  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  19405394 agcgtgacttaactcacgcggcgtgacttaagtcacg 19405358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 370 - 426
Alignment:
Q  123 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgg 179  Q
    ||||||||| || ||| |||| |||||||||||||| ||||||||||||| ||||||    
T  370 ttaacatgcataagggcatttgggatttttactttgggaatgagcgaaaccatttgg 426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 24366 - 24426
Alignment:
Q  118 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttg 178  Q
    |||| |||||||||||||||| |||||  | |||||||||| |||||||||| ||| ||||    
T  24366 gcaagttaacatgcgtaggggcattttaaacttttactttgggaatgagcgatactgtttg 24426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University