View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_29 (Length: 293)
Name: NF7229_low_29
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 29725046 - 29724765
Alignment:
| Q |
1 |
ttccagcaggtcggttcctaatgttgcatctcttaggaacagtgatagcaatagcaggattaatcttagcttgttttgcaagaggtgacaaaagaactga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29725046 |
ttccagcaggtcggttcctaatgttgcatctcttaggaacagtgatagcaatagcaggattaatcttagcttgttttgcaagaggtgacaaaagaactga |
29724947 |
T |
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| Q |
101 |
acaaagacatcttggagaagttctaagcaaagcaccaactctagcacaacaaactggtggaacttttgccctaacattacgtacagcacccaaacatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29724946 |
acaaagacatcttggagaagttctaagcaaagcaccaactctagcacaacaaactggtggaacttttgccctaacattacgtacagcacccaaacatgga |
29724847 |
T |
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| Q |
201 |
cttagactagcagctgctgacccaattggtgtccttccacattctccagctgcctcactttccaaaatgaacacacttgatg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29724846 |
cttagactagcagctgctgacccaattggtgtccttccacattctccagctgcctcactttccaaaatgaacacacttgatg |
29724765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 29706833 - 29706552
Alignment:
| Q |
1 |
ttccagcaggtcggttcctaatgttgcatctcttaggaacagtgatagcaatagcaggattaatcttagcttgttttgcaagaggtgacaaaagaactga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29706833 |
ttccagcaggtcggttcctaatgttgcatctcttaggaacagtgatagcaatagcaggattaatcttagcttgttttgcaagaggtgacaaaagaactga |
29706734 |
T |
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| Q |
101 |
acaaagacatcttggagaagttctaagcaaagcaccaactctagcacaacaaactggtggaacttttgccctaacattacgtacagcacccaaacatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29706733 |
acaaagacatcttggagaagttctaagcaaagcaccaactctagcacaacaaactggtggaacttttgccctaacattacgtacagcacccaaacatgga |
29706634 |
T |
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| Q |
201 |
cttagactagcagctgctgacccaattggtgtccttccacattctccagctgcctcactttccaaaatgaacacacttgatg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
29706633 |
cttagactagcagctgctgacccaattggtgtccttccacattctccacctgcttcactttccaaaatgaacacacttgatg |
29706552 |
T |
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