View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7229_low_35 (Length: 249)

Name: NF7229_low_35
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7229_low_35
NF7229_low_35
[»] chr7 (13 HSPs)
chr7 (10-249)||(4862988-4863227)
chr7 (10-245)||(4697972-4698207)
chr7 (10-249)||(4784613-4784852)
chr7 (10-249)||(4846799-4847038)
chr7 (10-249)||(4817042-4817281)
chr7 (10-249)||(4712844-4713083)
chr7 (10-245)||(4642803-4643038)
chr7 (10-155)||(4671739-4671884)
chr7 (10-202)||(4660903-4661095)
chr7 (10-203)||(4666034-4666227)
chr7 (10-200)||(4652619-4652809)
chr7 (10-203)||(4630008-4630201)
chr7 (10-203)||(4635956-4636149)
[»] chr4 (1 HSPs)
chr4 (13-203)||(18926563-18926753)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 4862988 - 4863227
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4862988 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 4863087  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcacc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863088 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcacc 4863187  T
Q  210 ttcgttgcaatatccaatgagagaaaccaagtgaatatga 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4863188 ttcgttgcaatatccaatgagagaaaccaagtgaatatga 4863227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 4698207 - 4697972
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||  || |||||||||||||| |||||||| |    
T  4698207 aacaatatgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgctgcccccaatagaatctcga 4698108  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcacc 209  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||  ||||    
T  4698107 gtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcacc 4698008  T
Q  210 ttcgttgcaatatccaatgagagaaaccaagtgaat 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  4698007 ttcgttgcaatatccaatgagagaaaccaagtgaat 4697972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 4784852 - 4784613
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  |||| ||||| |||||||| |||||||  || || || || ||||||||||    
T  4784852 aacaatatgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgcggcacctaatagaatctcaa 4784753  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcacc 209  Q
    | |||| |||||| ||||||||||  ||||| || ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||  ||||    
T  4784752 gcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctacacc 4784653  T
Q  210 ttcgttgcaatatccaatgagagaaaccaagtgaatatga 249  Q
    ||| |||||||||||||| || ||||||||||||||||||    
T  4784652 ttcattgcaatatccaataagtgaaaccaagtgaatatga 4784613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 4847038 - 4846799
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||||  ||||  ||||||||||||  |||||||||||||| || || |||||||| |    
T  4847038 aacaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatctcga 4846939  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcacc 209  Q
    |||| |  |||||  ||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||| |||||||||||  || |    
T  4846938 gtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactagaatcatctctgcatc 4846839  T
Q  210 ttcgttgcaatatccaatgagagaaaccaagtgaatatga 249  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  4846838 ttcgttgcaatatccaatgagggaaaccaagtgaatatga 4846799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 4817281 - 4817042
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||  |||| ||||| | |||||| |||||||  || || || || ||||||||||    
T  4817281 aacaatatgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgcggcacctaatagaatctcaa 4817182  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcacc 209  Q
    | |||| |||||| ||||||||||  ||||| || ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||  ||||    
T  4817181 gcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctacacc 4817082  T
Q  210 ttcgttgcaatatccaatgagagaaaccaagtgaatatga 249  Q
    ||| |||||||||||||| || ||||||||||||||||||    
T  4817081 ttcattgcaatatccaataagtgaaaccaagtgaatatga 4817042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 4713083 - 4712844
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    |||||||| || |||||||| |||||||||||||||||||| |||||  ||||  ||||||||||||| || ||||||||||| |  || ||||| | ||    
T  4713083 aacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaa 4712984  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcacc 209  Q
    |||| |  |||||  |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||| |||||||||||  || |    
T  4712983 gtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatc 4712884  T
Q  210 ttcgttgcaatatccaatgagagaaaccaagtgaatatga 249  Q
    ||| ||||||||||||||||| ||||| ||||||||||||    
T  4712883 ttcattgcaatatccaatgagggaaactaagtgaatatga 4712844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 4642803 - 4643038
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    |||||||||||||| |||||||||||||| ||||| || |||||||| ||  |||||||||||||||  | ||| ||||| || || || ||||| ||||    
T  4642803 aacaatatgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataattcagccctcttgcggcacctaatagaatttcaa 4642902  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcacc 209  Q
    | |||| | ||||||  || || || ||||  |||||||||||||| ||||  ||||| ||  | |||||||| |||||||| | |||||||||     |    
T  4642903 gcctctgcctccaaggtagtggctcgttattagaaccataaagatactcacaaagagtaccgtgctgcatgaactcataaaccaaaatcatctctgtgtc 4643002  T
Q  210 ttcgttgcaatatccaatgagagaaaccaagtgaat 245  Q
     |||||||||||||| | ||| || |||||||||||    
T  4643003 atcgttgcaatatcccacgagggacaccaagtgaat 4643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 4671739 - 4671884
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    |||||||||||||| |||||||||||||| ||||| || |||||||| ||  ||||||||||||||| || ||| || || || ||||| ||||||||||    
T  4671739 aacaatatgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataatttagccctctcgcagcacccaatagaatctcaa 4671838  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagata 155  Q
    | |||| | ||||||  || || || ||||  ||||||||||||||    
T  4671839 gcctctgcctccaaggtagtggctcgttattagaaccataaagata 4671884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 4660903 - 4661095
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    |||||||||||||| ||||| ||||| |||||||| || ||||| || ||  |||||||||||||||| ||||| |||||||  ||||| || |||||||    
T  4660903 aacaatatgttggtgctctttacgtcgcggtgtattattttgtgtttcacctcagcatgaagataatgcaaccctcttgctgaacccaataggatctcaa 4661002  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatct 202  Q
    | || | | ||||||  || || |  ||||  |||||||||||||  || | |||||| || || |||||||| |||||||| ||||||||||    
T  4661003 gcctttgcctccaaggtaggggctggttattagaaccataaagatgctcgcagagagtaccgcgctgcatgaattcataaaccagaatcatct 4661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 4666034 - 4666227
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    |||||||||||||| |||||||||||||||||||| || || || || ||  ||| |||||||||||  | ||| || ||||| ||||| ||||||||||    
T  4666034 aacaatatgttggtgctcttcacgtcacggtgtattatcttctgtttcacctcagtatgaagataattcagccctctcgctgcacccaaaagaatctcaa 4666133  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctc 203  Q
    | |||| |||||| |  || || |  ||||  |||||||||||||| || |  ||||| ||  | |||||||| |||||||| |||||||||||    
T  4666134 gcctctgcttccatgataggggctggttattagaaccataaagatactcgcaaagagtaccgtgctgcatgaactcataaaccagaatcatctc 4666227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 4652619 - 4652809
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    |||||||||||||| |||||||||||||||||||| || ||||| || ||  | |||||||||||||  | ||| || || |  ||||| ||||||||||    
T  4652619 aacaatatgttggtgctcttcacgtcacggtgtattatcttgtgtttcacctctgcatgaagataattcagccctctcgcggaacccaatagaatctcaa 4652718  T
Q  110 gtctcttcttcca-agtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcat 200  Q
    | |||||||||||  ||||| || |  ||||  |||||||||||||| ||||  ||||| ||  |||||||||| |||||||| | ||||||    
T  4652719 gcctcttcttccacggtaag-ggctggttattagaaccataaagatactcacacagagtaccgtgttgcatgaactcataaaccaaaatcat 4652809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 4630008 - 4630201
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    |||| ||||||||| ||||| |||||||| ||||| || |||||||| ||  ||| |||||||||||  | ||| || ||||| ||||| || |||||||    
T  4630008 aacagtatgttggtgctctttacgtcacgatgtattatcttgtgcttcacctcagaatgaagataattcagccctctcgctgcacccaataggatctcaa 4630107  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctc 203  Q
    | |||| |||||| |  || || | |||||  |||||||| ||||| || | |||||| ||  | |||||||| |||||||| |||||||||||    
T  4630108 gcctctgcttccatggtaggggctgattattggaaccatacagatactcgcagagagtaccgtgctgcatgaactcataaaccagaatcatctc 4630201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 4635956 - 4636149
Alignment:
Q  10 aacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaa 109  Q
    |||||||||||||| ||||| |||||||| ||||| || ||||  || ||  ||| |||||||||||  | ||| || ||||| ||||| ||||| ||||    
T  4635956 aacaatatgttggtgctctttacgtcacgatgtattatcttgtttttaacctcagtatgaagataattcagccctctagctgcacccaaaagaatttcaa 4636055  T
Q  110 gtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctc 203  Q
    | |||| |||||| |  || ||||  ||||  |||||||||||||| || | |||||| ||  | |||||||| ||||| || |||||||||||    
T  4636056 gcctctgcttccatggtaggggttggttattagaaccataaagatactcgcagagagtaccgtgctgcatgaactcatagaccagaatcatctc 4636149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 18926753 - 18926563
Alignment:
Q  13 aatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaagtc 112  Q
    ||||||||||| || ||||| ||||| ||||| || ||||| || ||  |||||||||||||||  | ||| ||||| || ||||| | ||||||||| |    
T  18926753 aatatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagcc 18926654  T
Q  113 tcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctc 203  Q
    | | |||||||   || ||||  ||||  |||||||| ||||| ||||  ||||| |||||||||||||| |||||||  |||||||||||    
T  18926653 tttgcttccaaagtaggggttggttattggaaccatatagatactcacaaagagtaccacgttgcatgaactcataaatcagaatcatctc 18926563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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