View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_4 (Length: 746)
Name: NF7229_low_4
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Original strand, 27895611 - 27896161
Alignment:
| Q |
18 |
caattaaccttttatgaaacctccaatgacgacgagtccttccaccaataagatgtcaacgatggcccagcccactccgctaattactatcttcatattt |
117 |
Q |
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| T |
27895611 |
caattaaccttttatgaaacctccaatgacgacgagtccttccaccaataagatgtcaacgatggcccagcccactccgctaattactatctctatattt |
27895710 |
T |
|
| Q |
118 |
tcccactagaacatcctttcacaacgactcatcatcttgaatcaacctccatatccactttgccaaaaggctcaaatcgatcttcctaatatctctcaca |
217 |
Q |
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| T |
27895711 |
tcccactagaacatcctttcacaacgactcatcatcttgaatcaacctccatatccactttaccaaaaggctcaaatcgatcttcctaatatctctcaca |
27895810 |
T |
|
| Q |
218 |
cctaaacctcccttctttttgaataaacaaatatactccatttcatccaacaaatcttactaccacttctctcccctctcccaaagaaatcttacaatca |
317 |
Q |
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| T |
27895811 |
cctaaacctcccttctttttgaataaacaaatatactccatttcatccaacaaatcttactaccacttctctcccctcccccaaagaaatcttacaatca |
27895910 |
T |
|
| Q |
318 |
agtggagttgttctcttttatttgaaaaacnnnnnnngtaattggtttgcatgctaatgattcaagttaatgttagattcactctgctttatgctaacca |
417 |
Q |
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| T |
27895911 |
agtggagttgttctcttttatttgaaaaactttttttgtaattggtttgcatgctaatgattcaagttaatgttagattcactctgctttatgctaacca |
27896010 |
T |
|
| Q |
418 |
caaatctgagattcatgagaacaagtttgaacaatatgtgaaaatagcacttgttattgaacgaagaacgttcagtttacattatcgaaaaagagatgtg |
517 |
Q |
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| T |
27896011 |
---------------------caagtttgaacaatatgcgaaaatagcacttgttattgaacgaagaaagtccagtttacattatcgaaaaagagatgtg |
27896089 |
T |
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| Q |
518 |
tgtactaagctaaataaggcacactctaataactacattagacagttaggaatggagggaaagttagttaca |
589 |
Q |
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| T |
27896090 |
tgtactaagctaaataagacacactctaataactacattagacagttaggaatggagggaaagttagttaca |
27896161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 671 - 731
Target Start/End: Original strand, 27896257 - 27896317
Alignment:
| Q |
671 |
ttccttcaatcattaacaaccataatatttttcgttctcaagttcaaactaaaactgatgt |
731 |
Q |
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| T |
27896257 |
ttccttcaatcactaacaaccataatgttttttgttctcaagttcaaactaaaacttatgt |
27896317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 620 - 659
Target Start/End: Original strand, 27896177 - 27896216
Alignment:
| Q |
620 |
tattattctgtttgcttattacacaagctactcgatggat |
659 |
Q |
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| T |
27896177 |
tattattctgtttgcttattacacaagctactcgatggat |
27896216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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