View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7229_low_7 (Length: 588)

Name: NF7229_low_7
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7229_low_7
NF7229_low_7
[»] chr1 (6 HSPs)
chr1 (18-355)||(35899452-35899789)
chr1 (21-489)||(44612869-44613337)
chr1 (20-254)||(11544103-11544337)
chr1 (447-554)||(11543878-11543985)
chr1 (315-481)||(44794953-44795118)
chr1 (95-135)||(44145653-44145693)
[»] scaffold0061 (1 HSPs)
scaffold0061 (20-545)||(28589-29117)
[»] scaffold0017 (3 HSPs)
scaffold0017 (20-545)||(169675-170203)
scaffold0017 (184-529)||(180929-181274)
scaffold0017 (87-136)||(174648-174697)
[»] chr3 (3 HSPs)
chr3 (21-480)||(26728415-26728874)
chr3 (87-207)||(8342963-8343083)
chr3 (452-553)||(8343253-8343354)
[»] chr5 (1 HSPs)
chr5 (92-262)||(29507186-29507356)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 35899452 - 35899789
Alignment:
Q  18 atttggagaaatacccacaagcattggatcaattatggagttaaagtatttggatttgagcgtaaacggttttgaaggtgtcatctctgaatctcatttc 117  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35899452 atttggagaaatacccacgagcattggatcaattatggagttaaagtatttggatttgagcgtaaacgcttttgaaggtgtcatctctgaatctcatttc 35899551  T
Q  118 actaacctctccaaattggaagatctatatttgtctcataactttctgactgtgaaggttagttatgattgggttcctccctttaaattaataaatttga 217  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35899552 actaacctctccaaattggaagatctatatttgtcttataactttctgactgtgaaggttagttatgactgggttcctccctttaaattaataaatttga 35899651  T
Q  218 atctagcatcttgaaatctaaattatagatttcctaactggcttcaaacacaaaactccttatcctatcttatcctttcaaatgtcagtaatctagatcc 317  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35899652 atctagcatcttgcaatctaaattatagatttcctaactggcttcaaacacaaaactccttatcctatcttatcctttcaaatgtcagtaatctagatcc 35899751  T
Q  318 aatacctacttggttttgggggaaattgaaaacactag 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35899752 aatacctacttggttttgggggaaattgaaaacactag 35899789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 21 - 489
Target Start/End: Original strand, 44612869 - 44613337
Alignment:
Q  21 tggagaaatacccacaagcattggatcaattatggagttaaagtatttggatttgagcgtaaacggttttgaaggtgtcatctctgaatctcatttcact 120  Q
    ||||||||||||| | ||||| |||||| |||  |||||| |||||||| |  || ||| ||||  |||||||||| ||||||||||||| |||||||||    
T  44612869 tggagaaatacccgcgagcatcggatcacttaccgagttacagtatttgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcact 44612968  T
Q  121 aacctctccaaattggaagatctatatttgtctcataactttctgactgtgaaggttagttatgattgggttcctccctttaaattaataaatttgaatc 220  Q
    |||||||||||||||||| | ||| | |||||| | ||||   ||||| ||||||||||| ||||||||||||| || ||| ||||| |||  |||        
T  44612969 aacctctccaaattggaaaaactagacttgtctgacaactcgttgactatgaaggttagtaatgattgggttcccccttttcaattattaacattgggct 44613068  T
Q  221 tagcatcttgaaatctaaattatagatttcctaactggcttcaaacacaaaactccttatcctatcttatcctttcaaatgtcagtaatctagatccaat 320  Q
    || ||||||| ||| | |||| |||||||||||| |||||||||||||||||    ||||||  | ||  |||||||||||| |||||| ||  |||||     
T  44613069 tatcatcttgtaatatgaattctagatttcctaattggcttcaaacacaaaatgaattatccattatttccctttcaaatgtgagtaatatatctccaac 44613168  T
Q  321 acctacttggttttgggggaaattgaaaacactagcttacttagacatttcaaacaacaatctcactggcaagattcctaatttggaactcaatcttacc 420  Q
    ||||  |||||||||||| |||||| ||||||||| |  | |    ||||||||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  44613169 acctctttggttttggggtaaattgcaaacactagttggcatgtcaatttcaaacaacaatatcacaggcatgattcctaatttggaactcaatcttacc 44613268  T
Q  421 aatcatccaataatacatttggctgtaaatcaacttgaaggtcccattccttcttttttattgaaagca 489  Q
    ||  || | || ||| |||||  |  ||||||  |||||||| |||||||||||||||||||| |||||    
T  44613269 aacaatactatgataaatttgagttcaaatcagtttgaaggttccattccttcttttttattgcaagca 44613337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 11544337 - 11544103
Alignment:
Q  20 ttggagaaatacccacaagcattggatcaattatggagttaaagtatttggatttgagcgtaaacggttttgaaggtgtcatctctgaatctcatttcac 119  Q
    |||||||||||||||| |||||||||||| |||  |||||| |   |||| || || ||| ||||  |||||||||  |  |||||||||| ||||||||    
T  11544337 ttggagaaatacccacgagcattggatcacttaccgagttagaaattttgaatctgggcggaaactcttttgaaggcattgtctctgaatcccatttcac 11544238  T
Q  120 taacctctccaaattggaagatctatatttgtctcataactttctgactgtgaaggttagttatgattgggttcctccctttaaattaataaatttgaat 219  Q
    ||||||||||||||||||||| ||| |||||||||| ||||| |  |||||||| ||||||    ||||||||||||| ||| |||||  | |||||  |    
T  11544237 taacctctccaaattggaagaactagatttgtctcagaacttaccaactgtgaaagttagtgcaaattgggttcctccttttcaattacaatatttgttt 11544138  T
Q  220 ctagcatcttgaaatctaaattatagatttcctaa 254  Q
    ||||||||||| ||||| ||||  | |||||||||    
T  11544137 ctagcatcttgcaatctcaattcaacatttcctaa 11544103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 447 - 554
Target Start/End: Complemental strand, 11543985 - 11543878
Alignment:
Q  447 aaatcaacttgaaggtcccattccttcttttttattgaaagcaacagcattacaactttctgaaaataaattttcagacttagttccctttctatgcaac 546  Q
    |||||||||||||||| ||||||||||| |||||||| |||||  |||||| || || ||  | |||||||||||||| |||||  |||||||||||| |    
T  11543985 aaatcaacttgaaggttccattccttctcttttattgcaagcagtagcattgcatctctccaataataaattttcagatttagtgtcctttctatgcagc 11543886  T
Q  547 aaaattaa 554  Q
    || |||||    
T  11543885 aatattaa 11543878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 315 - 481
Target Start/End: Complemental strand, 44795118 - 44794953
Alignment:
Q  315 tccaatacctacttggttttgggggaaattgaaaacactagcttacttagacatttcaaacaacaatctcactggcaagattcctaatttggaactcaat 414  Q
    ||||||||||  |||||||||||| |||||| ||||||||| |  | |    |||||||| |||||| |||| |||| ||||||||||||||||||||||    
T  44795118 tccaatacctctttggttttggggtaaattgcaaacactagttggcatgtcaatttcaaa-aacaatatcacaggcatgattcctaatttggaactcaat 44795020  T
Q  415 cttaccaatcatccaataatacatttggctgtaaatcaacttgaaggtcccattccttcttttttat 481  Q
    ||||||||   |||  ||||| |||||  |  ||||||  |||||||| |||||||||| |||||||    
T  44795019 cttaccaaaattcctgtaatagatttgagttcaaatcagtttgaaggttccattccttcctttttat 44794953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 44145653 - 44145693
Alignment:
Q  95 gtgtcatctctgaatctcatttcactaacctctccaaattg 135  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  44145653 gtgtcgtctctgaatcccatttcactaacctctccaaattg 44145693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 20 - 545
Target Start/End: Complemental strand, 29117 - 28589
Alignment:
Q  20 ttggagaaatacccacaagcattggatcaattatggagttaaagtatttggatttgagcgtaaacggttttgaaggtgtcatctctgaatctcatttcac 119  Q
    |||||||||||||||| ||||| |||||| |||  |||||||||  |||| |  |||||  ||||  ||||||||||||| |||||||||| ||||||||    
T  29117 ttggagaaatacccacgagcatcggatcacttacagagttaaagagtttgtacctgagccgaaactcttttgaaggtgtcgtctctgaatcccatttcac 29018  T
Q  120 taacctctccaaattggaagatctatatttgtctcataactttctgactgtgaaggttagttatgattgggttcctccctttaaattaataaatttgaat 219  Q
    |||||||||||||||| ||   ||||  |||||  | ||||   ||||| || |||||||| |||||||||||||||| ||| ||||| || | |||  |    
T  29017 taacctctccaaattgaaaaggctatggttgtccgacaactcattgactatggaggttagtaatgattgggttcctccttttcaattactagaattgggt 28918  T
Q  220 ctagcatcttgaaatctaaattatagatttcctaactggcttcaaacacaaaactccttatcctatcttatcctttcaaatgtcagtaatctagatccaa 319  Q
     || ||  ||| ||| | |||| || ||||||||| ||||| |||||||||||    ||||||  ||||  ||||||||||||||||||| ||  |||||    
T  28917 ttatcaaattgtaatatgaattctatatttcctaattggctccaaacacaaaatgaattatccactctttccctttcaaatgtcagtaatatatctccaa 28818  T
Q  320 tacctacttggttttgggggaaattgaaaacactagcttacttagacatttcaaacaacaatctcactggcaagattcctaatttggaactcaatct--- 416  Q
    |||||| |||||||||||| |||||| ||||| || ||  ||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||       
T  28817 tacctatttggttttggggaaaattgcaaacaataactagcttggacatttcaaacaacaatcttactggcatgattcctaatttagaactcaatcttgg 28718  T
Q  417 taccaatcatccaataatacatttggctgtaaatcaacttgaaggtcccattccttcttttttattgaaagcaacagcattacaactttctgaaaataaa 516  Q
    ||||||  ||||  | ||| |||||  |  ||||||  || ||||| ||||||||||||| || | | | |||| |||| || | |||||  | ||||||    
T  28717 taccaacaatccttttatagatttgatttcaaatcagtttaaaggttccattccttctttcttgtcgcaggcaagagcactatatctttccaataataaa 28618  T
Q  517 ttttcagacttagttccctttctatgcaa 545  Q
    |||||||| |||||| |||||||||||||    
T  28617 ttttcagatttagtttcctttctatgcaa 28589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 20 - 545
Target Start/End: Original strand, 169675 - 170203
Alignment:
Q  20 ttggagaaatacccacaagcattggatcaattatggagttaaagtatttggatttgagcgtaaacggttttgaaggtgtcatctctgaatctcatttcac 119  Q
    |||||||||||||||| ||||| |||||| |||  |||||||||  |||| |  |||||  ||||  ||||||||||||| |||||||||| ||||||||    
T  169675 ttggagaaatacccacgagcatcggatcacttacagagttaaagagtttgtacctgagccgaaactcttttgaaggtgtcgtctctgaatcccatttcac 169774  T
Q  120 taacctctccaaattggaagatctatatttgtctcataactttctgactgtgaaggttagttatgattgggttcctccctttaaattaataaatttgaat 219  Q
    |||||||||||||||| ||   ||||  |||||  | ||||   ||||| || |||||||| |||||||||||||||| ||| ||||| || | |||  |    
T  169775 taacctctccaaattgaaaaggctatggttgtccgacaactcattgactatggaggttagtaatgattgggttcctccttttcaattactagaattgggt 169874  T
Q  220 ctagcatcttgaaatctaaattatagatttcctaactggcttcaaacacaaaactccttatcctatcttatcctttcaaatgtcagtaatctagatccaa 319  Q
     || ||  ||| ||| | |||| || ||||||||| ||||| |||||||||||    ||||||  ||||  ||||||||||||||||||| ||  |||||    
T  169875 ttatcaaattgtaatatgaattctatatttcctaattggctccaaacacaaaatgaattatccactctttccctttcaaatgtcagtaatatatctccaa 169974  T
Q  320 tacctacttggttttgggggaaattgaaaacactagcttacttagacatttcaaacaacaatctcactggcaagattcctaatttggaactcaatct--- 416  Q
    |||||| |||||||||||| |||||| ||||| || ||  ||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||       
T  169975 tacctatttggttttggggaaaattgcaaacaataactagcttggacatttcaaacaacaatcttactggcatgattcctaatttagaactcaatcttgg 170074  T
Q  417 taccaatcatccaataatacatttggctgtaaatcaacttgaaggtcccattccttcttttttattgaaagcaacagcattacaactttctgaaaataaa 516  Q
    ||||||  ||||  | ||| |||||  |  ||||||  || ||||| ||||||||||||| || | | | |||| |||| || | |||||  | ||||||    
T  170075 taccaacaatccttttatagatttgatttcaaatcagtttaaaggttccattccttctttcttgtcgcaggcaagagcactatatctttccaataataaa 170174  T
Q  517 ttttcagacttagttccctttctatgcaa 545  Q
    |||||||| |||||| |||||||||||||    
T  170175 ttttcagatttagtttcctttctatgcaa 170203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 184 - 529
Target Start/End: Original strand, 180929 - 181274
Alignment:
Q  184 gattgggttcctccctttaaattaataaatttgaatctagcatcttgaaatctaaattatagatttcctaactggcttcaaacacaaaactccttatcct 283  Q
    |||||| ||||||| ||| |||||  || ||||  |||| ||||||| ||||| |||| |||||||||| | ||| || ||||||||||   ||||  ||    
T  180929 gattggtttcctccttttcaattagaaagtttgggtctaacatcttgtaatctgaattctagatttcctgattggtttaaaacacaaaatcacttacact 181028  T
Q  284 atcttatcctttcaaatgtcagtaatctagatccaatacctacttggttttgggggaaattgaaaacactagcttacttagacatttcaaacaacaatct 383  Q
    |||||  ||||||| ||||||||||||||  ||||||||||   ||||||||||  |||||| ||||||||  | || | ||||||||||||||||||||    
T  181029 atctttacctttcagatgtcagtaatctatctccaatacctcactggttttgggaaaaattgcaaacactatgtgacatggacatttcaaacaacaatct 181128  T
Q  384 cactggcaagattcctaatttggaactcaatcttaccaatcatccaataatacatttggctgtaaatcaacttgaaggtcccattccttcttttttattg 483  Q
     || |||| || |||||||||||||||||| || |||||   |||    ||| |||||  | |||||||| ||||||||  ||||||||  |||||||||    
T  181129 gaccggcatgaatcctaatttggaactcaaactcaccaacagtcctcatatagatttgagtttaaatcaatttgaaggttgcattcctttatttttattg 181228  T
Q  484 aaagcaacagcattacaactttctgaaaataaattttcagacttag 529  Q
     |||||  |||| |||||||||| || |||||||||||||| ||||    
T  181229 caagcaggagcagtacaactttccgataataaattttcagatttag 181274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 174648 - 174697
Alignment:
Q  87 ttttgaaggtgtcatctctgaatctcatttcactaacctctccaaattgg 136  Q
    ||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  174648 ttttgaaggtgttgtctctgaatcgcatttcactaacctctccaaattgg 174697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 21 - 480
Target Start/End: Original strand, 26728415 - 26728874
Alignment:
Q  21 tggagaaatacccacaagcattggatcaattatggagttaaagtatttggatttgagcgtaaacggttttgaaggtgtcatctctgaatctcatttcact 120  Q
    ||||||||||||  ||||||| |||||| ||| ||| ||| ||  ||||||  || | ||||||  ||||||||||||| |||||||||| |||||||||    
T  26728415 tggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtcgtctctgaatcccatttcact 26728514  T
Q  121 aacctctccaaattggaagatctatatttgtctcataactttctgactgtgaaggttagttatgattgggttcctccctttaaattaataaatttgaatc 220  Q
    ||||||||  |||||| ||| ||| |||||||| | || ||  ||| ||||||| ||||| || ||||||||||||| ||| ||||||   |||||  ||    
T  26728515 aacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccgtttcaattaagttatttgcgtc 26728614  T
Q  221 tagcatcttgaaatctaaattatagatttcctaactggcttcaaacacaaaactccttatcctatcttatcctttcaaatgtcagtaatctagatccaat 320  Q
    || | ||||| || || |||| |||||||||||| ||||| ||||||||||||  ||||||  | |||  ||||||||||||  ||||| | |  | |||    
T  26728615 taacgtcttgcaacctgaattctagatttcctaattggctccaaacacaaaacgacttatctgagctttccctttcaaatgtaggtaatttggcgcaaat 26728714  T
Q  321 acctacttggttttgggggaaattgaaaacactagcttacttagacatttcaaacaacaatctcactggcaagattcctaatttggaactcaatcttacc 420  Q
    ||||   ||||||||||| |||||| |||||||||     ||  ||||||||||||||||||||| ||| | ||||||  || ||||||||||||| |||    
T  26728715 acctcaatggttttggggaaaattgcaaacactagaactattgaacatttcaaacaacaatctcagtggtaggattccagatatggaactcaatctaacc 26728814  T
Q  421 aatcatccaataatacatttggctgtaaatcaacttgaaggtcccattccttctttttta 480  Q
     || |||    | || |||||  |  ||||||||| |||||| |||||||||||||||||    
T  26728815 cattatcttgaactagatttgagttcaaatcaactcgaaggttccattccttctttttta 26728874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 8342963 - 8343083
Alignment:
Q  87 ttttgaaggtgtcatctctgaatctcatttcactaacctctccaaattggaagatctatatttgtctcataactttctgactgtgaaggttagttatgat 186  Q
    |||||| |||||| ||||||||||||||||||| |||||||| |||||| |||| ||| | |||||| |||||||  ||  |||||||||||||  | ||    
T  8342963 ttttgatggtgtcgtctctgaatctcatttcacaaacctctcaaaattgaaagaactacagttgtctgataacttattgtttgtgaaggttagtactaat 8343062  T
Q  187 tgggttcctccctttaaatta 207  Q
    ||||||||||| ||| |||||    
T  8343063 tgggttcctccttttcaatta 8343083  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 553
Target Start/End: Original strand, 8343253 - 8343354
Alignment:
Q  452 aacttgaaggtcccattccttcttttttattgaaagcaacagcattacaactttctgaaaataaattttcagacttagttccctttctatgcaacaaaat 551  Q
    ||||||||||| ||||||| ||  |||||||| |||||  |||||| || || ||  | ||||||||||||||  ||||| |||| ||||||| ||||||    
T  8343253 aacttgaaggttccattccctcacttttattgcaagcagtagcattgcatctctccaataataaattttcagatatagtttccttactatgcagcaaaat 8343352  T
Q  552 ta 553  Q
    ||    
T  8343353 ta 8343354  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 262
Target Start/End: Complemental strand, 29507356 - 29507186
Alignment:
Q  92 aaggtgtcatctctgaatctcatttcactaacctctccaaattggaagatctatatttgtctcataactttctgactgtgaaggttagttatgattgggt 191  Q
    |||||||| ||||||||||||||||||||||| ||||||||||   ||  ||| | ||||||  |||| |  |||||||||||||||||  |||||||||    
T  29507356 aaggtgtcctctctgaatctcatttcactaacttctccaaattactaggcctacagttgtcttctaacctgttgactgtgaaggttagtactgattgggt 29507257  T
Q  192 tcctccctttaaattaataaatttgaatctagcatcttgaaatctaaattatagatttcctaactggcttc 262  Q
    ||| || ||| |||||| | |||||   ||||||||||| ||||| || | ||  |||||||| |||||||    
T  29507256 tccgccttttcaattaaaatatttgttactagcatcttgtaatctcaactctacctttcctaattggcttc 29507186  T

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