View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_9 (Length: 584)
Name: NF7229_low_9
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Original strand, 5196552 - 5197111
Alignment:
| Q |
18 |
gaatcaaccatgccacacttcccgaagcaatcaatcattgcattccatgaagcaacgttcttacattgaatcttgtcgaatacatttcgagcatccttta |
117 |
Q |
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| T |
5196552 |
gaatcaaccatgccacacttcccgaagcaatcaatcattgcattccatgaagcaacgttcttacattgaatcttgtcgaatacatttcgagcatccttta |
5196651 |
T |
|
| Q |
118 |
aactcccacacttggaatacatgtcaataagagcactggcaatgaaaacattcgcatcaaatcccttccggcatataattccatgaacttctcttcccca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5196652 |
aactcccacacttggaatacatgtcaataagagcactggcaatgaaaacattcgcatcaaatcccttccggcatataaatccatgaacttctcttcccca |
5196751 |
T |
|
| Q |
218 |
tttaacagaacctactgatccacatgcaggaagcagtgctgcaatagttacttgattaggacaaatccccgaaactagcatctcccgaaacaccgtaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5196752 |
tttaacagaacctactgatccacatgcaggaagcagtgctgcaatagttacttgattaggacaaatccccgaaactagcatctcccgaaacaccgtaaat |
5196851 |
T |
|
| Q |
318 |
gtttccctaaactgatgattttgtgcaaatccagaaatcaatgcattccatgcaaccacatcaggaataaacccctctttttgcattctctccataaaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5196852 |
gtttccctaaactgatgattttgtgcaaatccagaaatcaatgcattccatgcaaccacatcaggaataaacccctctttttgcattctctccataaaac |
5196951 |
T |
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| Q |
418 |
caaaagctttcttgctatctcccaaacgagcatatgtagcaatgatagcattccacgtaaaatcattcagctcatatccttccatcttcatcctctcaaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5196952 |
caaaagctttcttgctatctcccaaacgagcatatgtagcaatgatagcattccacgtaaaatcattcggctcatatccttccatcttcatcctctcaaa |
5197051 |
T |
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| Q |
518 |
caacaccaacgcttcttcaatcctccccgcattacaaaacccacaaatcattgatgtcca |
577 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
5197052 |
caacaccaacgcttcttcaatcctccccgtattacaaaacccacaaatcatcgatgtcca |
5197111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 11374147 - 11374175
Alignment:
| Q |
122 |
cccacacttggaatacatgtcaataagag |
150 |
Q |
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| T |
11374147 |
cccacacttggaatacatgtcaataagag |
11374175 |
T |
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