View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7230_high_1 (Length: 558)
Name: NF7230_high_1
Description: NF7230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7230_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 4 - 548
Target Start/End: Complemental strand, 37632208 - 37631665
Alignment:
| Q |
4 |
gcaatcatcgacaccgtatacctcagcgtaaacctctcagtcaaattgatagatcaacttcgatctattacacatttaatcaatggcataactatcaaca |
103 |
Q |
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| T |
37632208 |
gcaatcaccgacaccgtatacctcagcgtcaacctctcagtcaaattgatagatcaacttcgatctattacatattcaatcaatggcatacatatcaaca |
37632109 |
T |
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| Q |
104 |
atatagattgagagacatggataatctgatcactttgtttttgtcacatttgtatgatattagtctaaataaaggttatacctatgtctaaatggttgca |
203 |
Q |
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| T |
37632108 |
atatatattgagagacatggataatctgatcactttgtttttgtcacatttgtatgatattagtctaaataaaggttatacctgtgtctaaatggttgca |
37632009 |
T |
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| Q |
204 |
aagaaaatcaagaaatgaagaccgttcataagctttggtggatgtttccttaaggattagtattgagagacatattattgcatcatttagtaaagtttat |
303 |
Q |
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| T |
37632008 |
aagaaaatcaagaaatgaagaccgttcacaagctttggtggatgtttccttaaggattagtattgagggacatattgttgcatcatttagtaaagtttat |
37631909 |
T |
|
| Q |
304 |
aatgattatatgctttcaattgcacaagttgttgtacaaagtgagacaaatgactaacaatgcaaacataatctaaattaaagggtcaattatagaagaa |
403 |
Q |
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| T |
37631908 |
aatgattatatgctttcaattgcacaagttgttgtacaaagtgagacaaatgactaacaatgcaaacataatctaaattaaagggtcaattatagaagaa |
37631809 |
T |
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| Q |
404 |
aaaattaaaggaccattcagagaaatgactttctcattgnnnnnnnaagtggcatatatactattatttcgcaggttggtgtgctgcggagaggaagaaa |
503 |
Q |
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| T |
37631808 |
aaaattaaaggaccattccgagaaatgactttctcatt-tttttttaagtggcatatatactattatttcgcaggttggtgtgctgcggagaggaagaaa |
37631710 |
T |
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| Q |
504 |
aagatcaagaaagggttttatcttattagttcaacttgtgatgtc |
548 |
Q |
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| T |
37631709 |
aagatcaagaaagggttttatcttattagttcaacttgtggtgtc |
37631665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 530
Target Start/End: Original strand, 17197855 - 17197916
Alignment:
| Q |
469 |
atttcgcaggttggtgtgctgcggagaggaagaaaaagatcaagaaagggttttatcttatt |
530 |
Q |
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| T |
17197855 |
atttcgcaggttgatgtgttgtggaaaagaagataaagatcaagacagggttttatcttatt |
17197916 |
T |
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