View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7230_high_3 (Length: 238)
Name: NF7230_high_3
Description: NF7230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7230_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45675671 - 45675892
Alignment:
| Q |
1 |
ttcacttcattggatcccacagaggttttttgaatctgaatatttggtgtgtcattgtcattgttctcagagaatggttggtgtgtgtttggatcaattc |
100 |
Q |
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| T |
45675671 |
ttcacttcattggatcccacagaggttttttgaatctgaatatttggtgtgtcattgtcattgttctcagagaatggttggtgtgtgtttggatcaattc |
45675770 |
T |
|
| Q |
101 |
ctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgcgaccacctgat |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45675771 |
ctttttgctttagcttctttttcagacttgaattccatagattttttatctcattgtctgttcttccaggtaactgagctgcaatctgcgaccacctgat |
45675870 |
T |
|
| Q |
201 |
aattcaaaaggcaccaaagtat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
45675871 |
aattcaaaaggcaccaaagtat |
45675892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 37963188 - 37963053
Alignment:
| Q |
66 |
ctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttctt |
165 |
Q |
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| T |
37963188 |
ctcagagagtggtttgtgtgtgtttggatcaatgccactttgtctcaacctcttcttgagacatgaattccatagatttttaatctcattgtcagttctt |
37963089 |
T |
|
| Q |
166 |
ccaggtaactgagctgcaatctgcgaccacctgata |
201 |
Q |
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| T |
37963088 |
cctggtaattgtgctgcaatctgagaccatctgata |
37963053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 16138163 - 16138201
Alignment:
| Q |
135 |
ccatagattttttatttcattgtctgttcttccaggtaa |
173 |
Q |
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| T |
16138163 |
ccatacattttttatttcattgtctgttcttccaggtaa |
16138201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 51044772 - 51044663
Alignment:
| Q |
90 |
tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc |
189 |
Q |
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||||||||| |||| || | |||| |||||||||| |||||||||||| | |||||||| ||||| |||||||| || ||||| || | |||||| || |
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| T |
51044772 |
tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttga |
51044673 |
T |
|
| Q |
190 |
gaccacctga |
199 |
Q |
| |
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| T |
51044672 |
gcccacctga |
51044663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 16127079 - 16127111
Alignment:
| Q |
141 |
attttttatttcattgtctgttcttccaggtaa |
173 |
Q |
| |
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| T |
16127079 |
attttttatttcattgtctgttcttccaggtaa |
16127111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 53557754 - 53557711
Alignment:
| Q |
142 |
ttttttatttcattgtctgttcttccaggtaactgagctgcaat |
185 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
53557754 |
ttttttatgtcattgtctgttcttccaggtaactgagcagcaat |
53557711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 20740369 - 20740400
Alignment:
| Q |
145 |
tttatttcattgtctgttcttccaggtaactg |
176 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
20740369 |
tttatttcattgtctgttcttccaggtaactg |
20740400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 175
Target Start/End: Original strand, 20732633 - 20732663
Alignment:
| Q |
145 |
tttatttcattgtctgttcttccaggtaact |
175 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
20732633 |
tttatttcattgtctgttcttccaggtaact |
20732663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 34626408 - 34626517
Alignment:
| Q |
90 |
tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc |
189 |
Q |
| |
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||||||||| |||| || | |||| |||||||||| |||||||||||| | ||||| || ||||| || ||||| || ||||| || |||||||| || |
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| T |
34626408 |
tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgctgcaatttga |
34626507 |
T |
|
| Q |
190 |
gaccacctga |
199 |
Q |
| |
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| |||||||| |
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| T |
34626508 |
gcccacctga |
34626517 |
T |
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