View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7230_high_5 (Length: 212)
Name: NF7230_high_5
Description: NF7230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7230_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 44163369 - 44163193
Alignment:
| Q |
24 |
gaagtcccaagtatctaaaaggaagagaaccttgagaacaatgaagaaaactactcgccatgtccataaaatcggtttgaacattaaccccaatcaaaca |
123 |
Q |
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| T |
44163369 |
gaagtcccaagtatctaaaaggaagagaaccttgagaacaatgaagaaaactactcgccatgtccataaaattggtttgaacattaaccccaatcaaaca |
44163270 |
T |
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| Q |
124 |
actcttcgcaaaagtaatatcttcaaaccggaggccgactcaaatccttgaagcaaaactttaagagtccacaggttct |
202 |
Q |
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| T |
44163269 |
actcttcgcaaaatta--atcttcaaaccggaggccgactcaaatccttgaagcaaaactttaagagtccacaagttct |
44163193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 41448834 - 41448715
Alignment:
| Q |
75 |
tactcgccatgtccataaaatcggtttgaacattaaccccaatcaaacaactcttcgcaaaagtaatatcttcaaaccggaggccgactcaaatccttga |
174 |
Q |
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| T |
41448834 |
tacttgccatatccataaatccggtttgaacgttcaccgcaatcaaacaacttttcgaaaaatta--accttcaaacccgaagccttctcaaaaccttga |
41448737 |
T |
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| Q |
175 |
agcaaaactttaagagtccaca |
196 |
Q |
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| T |
41448736 |
agcaaaacttttaaagtccaca |
41448715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 7953709 - 7953555
Alignment:
| Q |
40 |
aaaaggaagagaaccttgagaacaatgaagaaaactactcgccatgtccataaaatcggtttgaacattaaccccaatcaaacaactcttcgcaaaagta |
139 |
Q |
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| T |
7953709 |
aaaaggaagagaaccttgagaacaatgtaagaagttacacgccatatccatgaattcggattgaacattaaccccaatcaaacaactcttagtaaaatta |
7953610 |
T |
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| Q |
140 |
atatcttcaaaccggaggccgactcaaatccttgaagcaaaactttaagagtccaca |
196 |
Q |
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| T |
7953609 |
--attttcaaacccgaagccaactcaaaaccttgaagcaaagctttaagcgtccaca |
7953555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 42750182 - 42750231
Alignment:
| Q |
80 |
gccatgtccataaaatcggtttgaacattaaccccaatcaaacaactctt |
129 |
Q |
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| T |
42750182 |
gccatctccataaaatcatttggaacattgaccccaatcaaacaactctt |
42750231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 33483941 - 33483816
Alignment:
| Q |
53 |
ccttgagaacaatgaagaaaactactcgccatgtccataaaatcggtttgaacattaaccccaatcaaacaactcttcgcaaaagtaatatcttcaaacc |
152 |
Q |
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|||||||| ||||| |||||| ||| | ||| |||||||| |||||||||||||| ||||| ||||| ||||| ||| ||||| || | ||||||||| |
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| T |
33483941 |
ccttgagagcaatgcagaaaattacaagtcatctccataaactcggtttgaacattcaccccgatcaagcaacttttcacaaaatta--accttcaaacc |
33483844 |
T |
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| Q |
153 |
ggaggccgactcaaatccttgaagcaaa |
180 |
Q |
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| T |
33483843 |
cgaagccttctcaaaaccttgaagcaaa |
33483816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 16649084 - 16648977
Alignment:
| Q |
86 |
tccataaaatcggtttgaacattaaccccaatcaaacaactcttcgcaaaagtaatatcttcaaaccggaggccgactcaaatccttgaagcaaaacttt |
185 |
Q |
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| T |
16649084 |
tccataaaatcagtttgaacatca-ccctaatcaaacaacttttcgcaaaattaac--cttcaaacccgaagccttctcaaaaccttgaagcaaagcttt |
16648988 |
T |
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| Q |
186 |
aagagtccaca |
196 |
Q |
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| T |
16648987 |
taaagtccaca |
16648977 |
T |
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