View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7230_low_1 (Length: 845)
Name: NF7230_low_1
Description: NF7230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7230_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 745; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 16 - 831
Target Start/End: Original strand, 40663915 - 40664730
Alignment:
| Q |
16 |
catcagtacccctgtcgaagaacaatttcgaagtactctgcaaattcttcctacnnnnnnnnnagtatcaaactttttacatatgcatttatttgataag |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
40663915 |
catcagtacccctgtcgaagaacaatttcgaagtactctgcaaattcttcctacttttttttcagtatcaagctttttacatatgcatttatttgttaag |
40664014 |
T |
|
| Q |
116 |
cgcataagcctttaattaaatggcctagttcatgttcaagtttatgtgatgtcatttacttccgagatattagaaaaactagaaacttacatgtttggta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40664015 |
cgcataagcctttaattaaatggcctagttcatgttcaagtttatgtgatgtcatttacttccgagatattagaaaaactagaaacttacatgtttggta |
40664114 |
T |
|
| Q |
216 |
attggttaggtgatggtattgtggtgaaaggtcaagcttatggaatatggagtatcagagtagatggaaatgatgcactagctgtttatagtacagttca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
40664115 |
attggttaggtgatggtattgtggtgaaaggtcaagcttatggaatatggagtattcgagtagatggaaatgatgcacttgctgtttatagtgcagttca |
40664214 |
T |
|
| Q |
316 |
caccgcacgtgaaattgctataaaagaacaaagaccagtcttaatcgaggtatgattaacttgagctcctaatttcacgtcaagctaagattatcatgat |
415 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40664215 |
tactgcacgtgaaattgctataaaagaacaaagaccagtcttaatcgaggtatgattaacttgagctcctaatttcacgtcaagctaagattatcatgat |
40664314 |
T |
|
| Q |
416 |
tctaaatattttcactaactgatctcatggtgaatgatgtttaggctcttagttatagagtaggacaccactctacatctgacgattcaacgaagtacag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40664315 |
tctaaatattttcactaactgatctcatggtgaatgatgtttaggctcttagttatagagtaggacaccactctacatctgacgattcaacgaagtacag |
40664414 |
T |
|
| Q |
516 |
accaattgatgagatcgaatattggaagatggaaagaaatcctgtgaatagattcaaaaagtgggttgaaagaaatggttggtggagtgacaaggatgat |
615 |
Q |
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| T |
40664415 |
accaattgatgagatcgaatattggaagatggaaagaaatcctgtgaatagattcaaaaagtgggttgaaagaaatggttggtggagtgacaaggatgaa |
40664514 |
T |
|
| Q |
616 |
ttggagcttagaagcagtgtcaggaagcaggtgagttcaagttgttaattttgttgcaattttagtccataatataaatcttggtatgcatgcaccaacg |
715 |
Q |
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| T |
40664515 |
ttggagcttagaagcagtgtcaggaagcaggtgagttcaagttgttaattttgttgcaattttagtccataatataaatcttggtatgcatgcaccagcg |
40664614 |
T |
|
| Q |
716 |
tgttttgatttttgacattttgttttctgatttgtattacagttaatgcaggctattcaagtggcagagaaagcacaaaaacctccacttgaggacatgt |
815 |
Q |
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| T |
40664615 |
tgttttgatttttgacattttgttttctgatttgtattacagttaatgcaggctattcaagtggcagagaaagcacaaaaacctccacttgaggacatgt |
40664714 |
T |
|
| Q |
816 |
ttactgatgtatatga |
831 |
Q |
| |
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|||||||||| ||||| |
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| T |
40664715 |
ttactgatgtctatga |
40664730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 792 - 833
Target Start/End: Complemental strand, 44058831 - 44058790
Alignment:
| Q |
792 |
aaaaacctccacttgaggacatgtttactgatgtatatgatg |
833 |
Q |
| |
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| T |
44058831 |
aaaaacctccacttgcagacatgtttagtgatgtatatgatg |
44058790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 267; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 185 - 614
Target Start/End: Original strand, 31915478 - 31915903
Alignment:
| Q |
185 |
ttagaaaaactagaaacttacatgtttggtaattggttaggtgatggtattgtggtgaaaggtcaagcttatggaatatggagtatcagagtagatggaa |
284 |
Q |
| |
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|||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31915478 |
ttagaaaaactagaaacttatat-tttggtgtttggttaggtgatggtattgtggtgaaaggtcaagcttatggaatatggagtatcagagtagatggaa |
31915576 |
T |
|
| Q |
285 |
atgatgcactagctgtttatagtacagttcacaccgcacgtgaaattgctataaaagaacaaagaccagtcttaatcgaggtatgattaacttgagctcc |
384 |
Q |
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|||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |
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| T |
31915577 |
atgatgcacttgctgtttatagtgcagttcataccgcacgtgaaattgctataaaagaacaaagaccagtcttaattgaggtatgattgagttgagctcc |
31915676 |
T |
|
| Q |
385 |
taatttcacgtcaagctaagattatcatgattctaaatattttcactaactgatctcatgg----tgaatgatgtttaggctcttagttatagagtagga |
480 |
Q |
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|||||| |||||| || ||||||||||||||||||| ||||||||| ||||| ||| ||| ||||||||||| |||||||||||||||||||||| |
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| T |
31915677 |
taattttacgtcatgccaagattatcatgattctaagtattttcaccaactggtctactggtgaatgaatgatgttcaggctcttagttatagagtaggc |
31915776 |
T |
|
| Q |
481 |
caccactctacatctgacgattcaacgaagtacagaccaattgatgagatcgaatattggaagatggaaagaaatcctgtgaatagattcaaaaagtggg |
580 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||||| |||| |||||| ||||| | |||||||||||||||| ||||||||||||||| |||| |
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| T |
31915777 |
caccattctacatccgacgattcaaccaagtacagagcaatcgatgag-------attggtaaatggaaagaaatcctgcgaatagattcaaaaaatggg |
31915869 |
T |
|
| Q |
581 |
ttgaaagaaatggttggtggagtgacaaggatga |
614 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |
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| T |
31915870 |
ttgaaaggaatggttggtggagtgacaaggatga |
31915903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 745 - 795
Target Start/End: Original strand, 31915917 - 31915967
Alignment:
| Q |
745 |
atttgtattacagttaatgcaggctattcaagtggcagagaaagcacaaaa |
795 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31915917 |
atttgtattacagttaatgcatgctattcaagtggcagagaaagcacaaaa |
31915967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 31915063 - 31915100
Alignment:
| Q |
16 |
catcagtacccctgtcgaagaacaatttcgaagtactc |
53 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||| |
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| T |
31915063 |
catcagtacccctgttgaagaacaattacgaagtactc |
31915100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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