View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7230_low_10 (Length: 232)
Name: NF7230_low_10
Description: NF7230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7230_low_10 |
 | |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 18459709 - 18459932
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
18459709 |
tttggtggtggtggtgggggattcacggatttggcatttccgtcatcatgcgcatcttcaagtaaaagaagcgtcaacacaataggaggttcattctaag |
18459808 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtcaaaa-atgaacacagtttctacactggttttgtccaa |
208 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| | ||| | |
|
|
| T |
18459809 |
gtggatcatcatgtggggcatcaacaggaacaaccatgactgaaagcagtgcgaagcagagtcaaaagatgaacacagtttctgcactggttctatccga |
18459908 |
T |
|
| Q |
209 |
aattcgaaatccggaacgcatgaa |
232 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
18459909 |
aattcaaaatccggaacgcatgaa |
18459932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 6162002 - 6162216
Alignment:
| Q |
19 |
ggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcat |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
6162002 |
ggtggtgggggattctcggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcagcaacacaataggaggttcattctgaggtggatcat |
6162101 |
T |
|
| Q |
119 |
catgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaa |
217 |
Q |
| |
|
||| | ||| ||||| |||||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||| | ||| ||| ||||| |
|
|
| T |
6162102 |
catttaggggatcaacaggaacaaccatgactgaaaacagtgcgaagtagagtcagaaaatgaacacagtttctgcactggtgctctccggaatccgaaa |
6162201 |
T |
|
| Q |
218 |
tccggaacgcatgaa |
232 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
6162202 |
tccagaacgcatgaa |
6162216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 54586689 - 54586518
Alignment:
| Q |
13 |
ggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtg |
112 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||| |||| |||| |||||||||||||||||| ||||||||| ||| || ||||| ||| || || |
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|
| T |
54586689 |
ggtggtggtggtgggggcttctcggatttggcatttcccgaattatgcacatcttcaagtaaaagaaccggcaacacgatatgatgttcaatctcagctg |
54586590 |
T |
|
| Q |
113 |
gatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaaca |
183 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | |||||||| | ||||||||||||||| |||||||||| |
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|
| T |
54586589 |
gatcatcatttggggcatcaaccggaacaaccataactgaaaacaatgcgaagcagagtcagaaaatgaaca |
54586518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 52972390 - 52972513
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||| ||||| ||| || |
|
|
| T |
52972390 |
tttggtggcggtgatgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagagacaacacattaggatgttcaatctcag |
52972489 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaa |
133 |
Q |
| |
|
|||||||| ||| ||||||||||| |
|
|
| T |
52972490 |
gtggatcaacatttggggcatcaa |
52972513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 9635722 - 9635545
Alignment:
| Q |
13 |
ggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtg |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||| ||||| |
|
|
| T |
9635722 |
ggtggtggtggtgggggattctcggatttggcattttcggaatcatgcacatcttcaagtaaaagaaccggcaacacaataggaggatcaatctcaggtg |
9635623 |
T |
|
| Q |
113 |
gatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagttt |
189 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| | |||||||| ||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
9635622 |
gatcatcatttggggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaatgagcacagttt |
9635545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 38619536 - 38619314
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||| || |
|
|
| T |
38619536 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgcgtcttcaagtaaaagaagcggcaacgcattaggaggttcaatctcag |
38619437 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtc-aaaaatgaacacagtttctacactggttttgtccaa |
208 |
Q |
| |
|
|||||||| ||| || |||||||| ||||||||| | ||||||| ||| | | ||| |||| ||||||||||||||||||| |||||| ||| | |
|
|
| T |
38619436 |
gtggatcaacatttgaggcatcaatcggaacaaccatatctgaaaacagtac-aggcatagtcaaaaaatgaacacagtttctgtactggtgcagtctag |
38619338 |
T |
|
| Q |
209 |
aattcgaaatccggaacgcatgaa |
232 |
Q |
| |
|
| |||||||||| |||||||||| |
|
|
| T |
38619337 |
atttcgaaatccataacgcatgaa |
38619314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 17312488 - 17312654
Alignment:
| Q |
25 |
gggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtg |
124 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||| ||| || |
|
|
| T |
17312488 |
gggggtttctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaacacattaggatgttcaatctcaggtggatcaacatttg |
17312587 |
T |
|
| Q |
125 |
gggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttct |
191 |
Q |
| |
|
||||||||| |||||||| | ||||||| ||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
17312588 |
gggcatcaaccagaacaaccatatctgaaaacagtgc-aagcatagtcagaaaatgaacacagtttct |
17312654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 41257304 - 41257526
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| || |
|
|
| T |
41257304 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaacgcattaggaggttcaatctcag |
41257403 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaa |
208 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||| | ||||||| ||||| | ||| ||||| ||||| |||||||||||| |||||| |||| |
|
|
| T |
41257404 |
gtggatcaacatttggggcatcaatcggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaataaacacagtttctgtactggtgcagtccgg |
41257502 |
T |
|
| Q |
209 |
aattcgaaatccggaacgcatgaa |
232 |
Q |
| |
|
| |||||||||| ||||||||||| |
|
|
| T |
41257503 |
atttcgaaatccagaacgcatgaa |
41257526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 19215819 - 19215685
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||| ||| || |
|
|
| T |
19215819 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaatgcattaagaggttcagtctcag |
19215720 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaagaggaacaacc |
144 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
19215719 |
gtggatcaacatttggggcatcaaccggaacaacc |
19215685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 15889456 - 15889269
Alignment:
| Q |
14 |
gtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtgg |
113 |
Q |
| |
|
||||| |||||||||||||| || |||||| | ||| ||||||||| |||||||||||||||||| | |||| | |||||| ||||| ||| || ||| |
|
|
| T |
15889456 |
gtggtagtggtgggggattctcgaatttggaaattcaagaatcatgcacatcttcaagtaaaagaaccagcaaagcgataggatgttcaatctcagctgg |
15889357 |
T |
|
| Q |
114 |
atcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggtt |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| | |||||||| ||||| |||| ||||| |||||||||| ||||||| ||||||| |
|
|
| T |
15889356 |
atcatcatttggggcatcaaccggaacaaccataactgaaaacagtgccaagcttagtcagaaaatgaacatagtttctgtactggtt |
15889269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 13850662 - 13850796
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||| || |
|
|
| T |
13850662 |
tttggtggtggtggtgggggattctcggatttggcattaccgaaatcatgcgcatcttcaagtaaaagaagcggcaacacattaggaggttaaatctcag |
13850761 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaagaggaacaacc |
144 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
13850762 |
gtggatcaacatttggggcatcaactggaacaacc |
13850796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 38965934 - 38965714
Alignment:
| Q |
13 |
ggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtg |
112 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||| |||||||| |||||| ||||| ||| || || |
|
|
| T |
38965934 |
ggtggtggtagtgggggattctcggatttggcaattctggaatcatgcacatcttcaagtaaaagaaccggcaacatgataggatgttcaatctcagctg |
38965835 |
T |
|
| Q |
113 |
gatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaat |
211 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | | ||||| ||||| ||||| ||||| |||||||||||||||||| |||||| | |||| | | |
|
|
| T |
38965834 |
gatcatcatttggggcatcaaccggaacaaccataattgaaatcagtgccaagcatagtcagaaaatgaacacagtttctgtactggtgtagtccggatt |
38965735 |
T |
|
| Q |
212 |
tcgaaatccggaacgcatgaa |
232 |
Q |
| |
|
||||||||| ||| ||||||| |
|
|
| T |
38965734 |
tcgaaatccagaatgcatgaa |
38965714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 34833843 - 34834024
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||| || |
|
|
| T |
34833843 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcagcaacgcattaggaggttcaatcttag |
34833942 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttct |
191 |
Q |
| |
|
|| ||||| || ||||||||||| ||||||||| | ||||||| ||||| | | | ||||| |||||||||||||||||| |
|
|
| T |
34833943 |
gtagatcaaaatttggggcatcaatcggaacaaccatatctgaaaacagtgc-atgtatagtcagaaaatgaacacagtttct |
34834024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 25761529 - 25761307
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||| ||||||||||||||| | | ||||||||||| |||||| |||||||||||||||||||||||||||| ||| || ||||||||||| ||| || |
|
|
| T |
25761529 |
tttggtcgtggtggtgggggatactcagatttggcattaccggaaccatgcgcatcttcaagtaaaagaagcggaaacgcattaggaggttcaatctcag |
25761430 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaa |
208 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||| | ||||||| ||||| | ||| ||||| |||||||||||||||| | |||||| |||| |
|
|
| T |
25761429 |
gtggatcaacatttggggcatcaaccggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttttgtactggtgcagtccgg |
25761331 |
T |
|
| Q |
209 |
aattcgaaatccggaacgcatgaa |
232 |
Q |
| |
|
| |||||| ||||||||||||||| |
|
|
| T |
25761330 |
atttcgaactccggaacgcatgaa |
25761307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 20236122 - 20236209
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggag |
97 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||| ||||||| || |||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
20236122 |
tttggtgatggtggtgggggattctcgtatttggcattaccggaataatacgcatcttcaagtaaaagaagccgcgacacattaggag |
20236209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 23710480 - 23710700
Alignment:
| Q |
13 |
ggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtg |
112 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||| |||||||| | | ||||| |
|
|
| T |
23710480 |
ggtggtagtggtgggggattctcagatttggcattcccggaatcatacacatcttcaagtaaaagaagcggcaacataatatgaggttcaatttcaggtg |
23710579 |
T |
|
| Q |
113 |
gatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaat |
211 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| | || |||| |||| | ||| ||||| |||||||||| ||||| | |||||| ||| | ||| |
|
|
| T |
23710580 |
gatcatcatttggggcatcaaccgaaacaaccatatctaaaaacagtgtcatgcatagtcagaaaatgaacatagtttatgtactggtgcagtctagaat |
23710679 |
T |
|
| Q |
212 |
tcgaaatccggaacgcatgaa |
232 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23710680 |
tcgaaatccggaacgcatgaa |
23710700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 9173677 - 9173899
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| ||| || |
|
|
| T |
9173677 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgtatcttcaagtaaaagaagtggcaacacattaggatgttcaatctcag |
9173776 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaa |
208 |
Q |
| |
|
|||||||| ||| |||| ||||| ||| ||||| | ||||||| ||||| | ||| ||||| |||||||||| ||||||| |||||| ||| |
|
|
| T |
9173777 |
gtggatcaacatttgggatatcaaccggagcaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacatagtttctgtactggtgcagtctgg |
9173875 |
T |
|
| Q |
209 |
aattcgaaatccggaacgcatgaa |
232 |
Q |
| |
|
| || ||||||||||||||||||| |
|
|
| T |
9173876 |
attttgaaatccggaacgcatgaa |
9173899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 754337 - 754231
Alignment:
| Q |
38 |
atttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggggcatcaagagg |
137 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||| ||| ||||||||||| || |
|
|
| T |
754337 |
atttggcattcccggaatcatgtgcatcttcaagtaaaagaagcagcaacacaatagaaggttcaatcttaggtggatcagcatttggggcatcaaccgg |
754238 |
T |
|
| Q |
138 |
aacaacc |
144 |
Q |
| |
|
||||||| |
|
|
| T |
754237 |
aacaacc |
754231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 50515623 - 50515401
Alignment:
| Q |
10 |
tttggtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
109 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || | | ||||||| ||| || |
|
|
| T |
50515623 |
tttggtggtgttggtgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaatgcatttgaaggttcaatctcag |
50515524 |
T |
|
| Q |
110 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtc-aaaaatgaacacagtttctacactggttttgtccaa |
208 |
Q |
| |
|
|||||||| ||| ||||| ||||| ||||||||| | |||||| ||||| | ||| |||| ||||||||||||||||| | |||||| | |||| |
|
|
| T |
50515523 |
gtggatcaacatttggggtatcaaccggaacaaccatatatgaaaacagtgc-atgcatagtcaaaaaatgaacacagtttttgtactggtgtagtccgg |
50515425 |
T |
|
| Q |
209 |
aattcgaaatccggaacgcatgaa |
232 |
Q |
| |
|
| |||||| ||||||| ||||||| |
|
|
| T |
50515424 |
atttcgaattccggaaagcatgaa |
50515401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 44713048 - 44713223
Alignment:
| Q |
14 |
gtggtggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtgg |
113 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||| ||| |||||||| ||||||||||||||| ||| ||||||||| ||||||||| | ||| | |||| |
|
|
| T |
44713048 |
gtggtggtggtgggggattctcagatatggcattaccgtaatcatgcacatcttcaagtaaaataagtggcaacacattaggaggttgaatctcatgtgg |
44713147 |
T |
|
| Q |
114 |
atcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagttt |
189 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||| | ||||||| | ||| | ||| ||||| |||||||||||||||| |
|
|
| T |
44713148 |
atcaacatttggggcatcaaccggaacaaccatatctgaaaacaatgc-aggcatagtcagaaaatgaacacagttt |
44713223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 45910454 - 45910578
Alignment:
| Q |
108 |
aggtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtcc |
206 |
Q |
| |
|
|||||||||| ||| |||||||| || ||||||||| | ||||||| ||||| | ||| ||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
45910454 |
aggtggatcaacatttggggcattaaccggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttctgtactggtgcagtcc |
45910552 |
T |
|
| Q |
207 |
aaaattcgaaatccggaacgcatgaa |
232 |
Q |
| |
|
|| |||||| ||| ||||||||||| |
|
|
| T |
45910553 |
gaatttcgaactccagaacgcatgaa |
45910578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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