View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7230_low_3 (Length: 577)

Name: NF7230_low_3
Description: NF7230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7230_low_3
NF7230_low_3
[»] chr2 (33 HSPs)
chr2 (270-565)||(179448-179743)
chr2 (3-42)||(1415826-1415865)
chr2 (1-42)||(5427661-5427702)
chr2 (1-42)||(31788723-31788764)
chr2 (1-41)||(30923250-30923290)
chr2 (1-41)||(31193129-31193169)
chr2 (1-41)||(38445433-38445473)
chr2 (7-42)||(2808247-2808282)
chr2 (7-42)||(4193109-4193144)
chr2 (7-42)||(22422000-22422035)
chr2 (7-42)||(25087307-25087342)
chr2 (7-42)||(27248925-27248960)
chr2 (7-42)||(31580429-31580464)
chr2 (3-42)||(32448409-32448448)
chr2 (7-42)||(32913500-32913535)
chr2 (3-42)||(33923974-33924013)
chr2 (7-42)||(36234270-36234305)
chr2 (4-42)||(4041386-4041424)
chr2 (7-41)||(4228395-4228429)
chr2 (7-41)||(21570183-21570217)
chr2 (1-42)||(4779020-4779061)
chr2 (5-42)||(7646749-7646786)
chr2 (1-42)||(9374337-9374378)
chr2 (1-42)||(12553961-12554002)
chr2 (1-42)||(18763735-18763776)
chr2 (1-42)||(36942914-36942955)
chr2 (1-42)||(37876398-37876439)
chr2 (1-42)||(41328006-41328047)
chr2 (1-41)||(459051-459091)
chr2 (3-39)||(4100599-4100635)
chr2 (10-42)||(26025270-26025302)
chr2 (1-41)||(36692141-36692181)
chr2 (7-39)||(38575263-38575295)
[»] chr1 (28 HSPs)
chr1 (140-193)||(21695315-21695368)
chr1 (1-42)||(41081478-41081519)
chr1 (1-42)||(49504386-49504427)
chr1 (1-41)||(11462274-11462314)
chr1 (1-41)||(14872899-14872939)
chr1 (3-39)||(24583211-24583247)
chr1 (3-39)||(24583407-24583443)
chr1 (1-41)||(36894200-36894240)
chr1 (3-42)||(5984078-5984117)
chr1 (7-42)||(9686979-9687014)
chr1 (7-42)||(20266574-20266609)
chr1 (7-42)||(30879347-30879382)
chr1 (7-42)||(34519400-34519435)
chr1 (3-42)||(34878069-34878108)
chr1 (7-42)||(48217709-48217744)
chr1 (3-41)||(21687640-21687678)
chr1 (7-41)||(35584398-35584432)
chr1 (1-42)||(26535596-26535637)
chr1 (1-42)||(27456749-27456790)
chr1 (9-42)||(27914881-27914914)
chr1 (9-42)||(30712083-30712116)
chr1 (1-42)||(32395257-32395298)
chr1 (9-42)||(33816942-33816975)
chr1 (9-42)||(33876412-33876445)
chr1 (1-42)||(44915899-44915940)
chr1 (1-41)||(10776253-10776293)
chr1 (7-39)||(18569088-18569120)
chr1 (1-41)||(44637683-44637723)
[»] chr6 (18 HSPs)
chr6 (1-42)||(606462-606503)
chr6 (1-42)||(7514994-7515035)
chr6 (1-42)||(32327011-32327052)
chr6 (1-41)||(12170726-12170766)
chr6 (7-42)||(7028123-7028158)
chr6 (7-42)||(8497236-8497271)
chr6 (7-42)||(23947091-23947126)
chr6 (4-42)||(28634887-28634925)
chr6 (1-42)||(3913365-3913406)
chr6 (1-42)||(9341442-9341483)
chr6 (5-42)||(14174862-14174899)
chr6 (5-42)||(14179398-14179435)
chr6 (1-42)||(33052959-33053000)
chr6 (5-41)||(1450528-1450564)
chr6 (7-39)||(7880879-7880911)
chr6 (10-42)||(29319668-29319700)
chr6 (1-41)||(34185486-34185526)
chr6 (3-39)||(34489465-34489501)
[»] chr4 (23 HSPs)
chr4 (1-42)||(13634392-13634433)
chr4 (1-42)||(4142555-4142596)
chr4 (1-42)||(19853303-19853344)
chr4 (1-42)||(21686033-21686074)
chr4 (1-41)||(2521056-2521096)
chr4 (1-41)||(26633463-26633503)
chr4 (1-41)||(56040438-56040478)
chr4 (7-42)||(2115362-2115397)
chr4 (3-42)||(6155000-6155039)
chr4 (7-42)||(9284191-9284226)
chr4 (7-42)||(9528651-9528686)
chr4 (7-42)||(20569537-20569572)
chr4 (7-42)||(25274163-25274198)
chr4 (3-42)||(47320204-47320243)
chr4 (4-42)||(12265738-12265776)
chr4 (7-41)||(53616425-53616459)
chr4 (1-42)||(17949114-17949155)
chr4 (1-42)||(17952966-17953007)
chr4 (1-42)||(32766791-32766832)
chr4 (1-34)||(32952540-32952573)
chr4 (508-565)||(45440000-45440057)
chr4 (1-38)||(46990909-46990946)
chr4 (1-42)||(53811295-53811336)
[»] chr3 (30 HSPs)
chr3 (1-42)||(21533600-21533641)
chr3 (1-40)||(48650527-48650566)
chr3 (1-42)||(6954487-6954528)
chr3 (1-42)||(20464756-20464797)
chr3 (1-42)||(43017144-43017185)
chr3 (1-42)||(52922908-52922949)
chr3 (1-41)||(40487581-40487621)
chr3 (3-42)||(628715-628754)
chr3 (7-42)||(2342713-2342748)
chr3 (7-42)||(4178830-4178865)
chr3 (7-42)||(25162701-25162736)
chr3 (7-42)||(38854813-38854848)
chr3 (3-42)||(47041839-47041878)
chr3 (3-41)||(29503722-29503760)
chr3 (7-41)||(32607734-32607768)
chr3 (7-41)||(44907174-44907208)
chr3 (1-39)||(45568239-45568277)
chr3 (7-41)||(50611193-50611227)
chr3 (5-42)||(9797325-9797362)
chr3 (1-42)||(10108492-10108533)
chr3 (1-42)||(10229732-10229773)
chr3 (1-42)||(10233326-10233367)
chr3 (1-42)||(36910557-36910598)
chr3 (1-38)||(43488386-43488423)
chr3 (3-39)||(3085085-3085121)
chr3 (1-41)||(9998723-9998763)
chr3 (10-42)||(17238073-17238105)
chr3 (1-41)||(23799740-23799780)
chr3 (5-41)||(46178831-46178867)
chr3 (1-41)||(46304313-46304353)
[»] chr8 (10 HSPs)
chr8 (3-42)||(1236487-1236526)
chr8 (1-42)||(10377933-10377974)
chr8 (3-42)||(3240642-3240681)
chr8 (7-42)||(14906697-14906732)
chr8 (3-42)||(30568110-30568149)
chr8 (1-40)||(40211091-40211130)
chr8 (1-39)||(33214463-33214501)
chr8 (1-42)||(7883030-7883071)
chr8 (1-42)||(23230902-23230943)
chr8 (4-41)||(28240113-28240150)
[»] scaffold0014 (1 HSPs)
scaffold0014 (3-41)||(201148-201186)
[»] chr7 (20 HSPs)
chr7 (1-42)||(28044547-28044588)
chr7 (1-42)||(48316610-48316651)
chr7 (1-41)||(12141099-12141139)
chr7 (2-42)||(21266655-21266695)
chr7 (1-41)||(48061681-48061721)
chr7 (7-42)||(1448606-1448641)
chr7 (7-42)||(12502026-12502061)
chr7 (7-42)||(12527660-12527695)
chr7 (7-42)||(14627672-14627707)
chr7 (7-42)||(26492633-26492668)
chr7 (7-42)||(42066836-42066871)
chr7 (7-41)||(32684936-32684970)
chr7 (7-41)||(34773979-34774013)
chr7 (7-41)||(45198808-45198842)
chr7 (1-42)||(17611653-17611694)
chr7 (1-41)||(3267009-3267049)
chr7 (5-41)||(20083604-20083640)
chr7 (10-42)||(23425147-23425179)
chr7 (1-41)||(35261559-35261599)
chr7 (6-42)||(39328585-39328621)
[»] chr5 (18 HSPs)
chr5 (1-42)||(6011929-6011970)
chr5 (1-42)||(9113516-9113557)
chr5 (1-41)||(24229576-24229616)
chr5 (3-42)||(8088004-8088043)
chr5 (3-42)||(13422190-13422229)
chr5 (3-42)||(14726252-14726291)
chr5 (7-42)||(21060057-21060092)
chr5 (7-42)||(34881987-34882022)
chr5 (3-42)||(38007615-38007654)
chr5 (7-41)||(781658-781692)
chr5 (1-39)||(8096293-8096331)
chr5 (3-41)||(35851055-35851093)
chr5 (1-42)||(13007485-13007526)
chr5 (7-40)||(18677242-18677275)
chr5 (1-42)||(26825686-26825727)
chr5 (1-41)||(27576160-27576200)
chr5 (10-42)||(30371894-30371926)
chr5 (5-41)||(36057103-36057139)
[»] scaffold0884 (1 HSPs)
scaffold0884 (3-41)||(1765-1803)
[»] scaffold0445 (1 HSPs)
scaffold0445 (1-42)||(1629-1670)
[»] scaffold0146 (1 HSPs)
scaffold0146 (10-42)||(16094-16126)
[»] scaffold0022 (1 HSPs)
scaffold0022 (9-41)||(83212-83244)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 270 - 565
Target Start/End: Complemental strand, 179743 - 179448
Alignment:
Q  270 taagatctcagaaacaaggttcctgctgcatcaatcttcaacaaagggcgtagctcatccggaggcaactggtgtattaggacgttgatatctgacattg 369  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||  || |||||||||||| ||||||||||||| ||||||| |||||||||||    
T  179743 taagatctcaggaacaaggttcctgctgcatcattcttcaacaaagggcagagttcatccggaggcgactggtgtattagaacgttgacatctgacattg 179644  T
Q  370 cacctagtttagccaaatagtcagcactttgatttccttcccggagggtgtggttgagcgaaaaattctttagagaaagcttgtctctgatgtcttggat 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  179643 cacctagtttagccaaatagtcagcactttgatttccttcccggagggtgtggttgagcgaaaaattccttagagaaagcttgtctctgatatcttggat 179544  T
Q  470 aagggctacatgaatatggaactttgagctggtggtattgatgagattaattgaaaggagagaatctaaataaaccgccatgtctgtgatgtccat 565  Q
     |||||  ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  179543 tagggccgcatgaatatggaactttgaactggtggtagtgatgagattaattgaaaggagagaatctgaataaaccgccatatctgtgatgcccat 179448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 1415826 - 1415865
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  1415826 tctatcgatttgaatgaatgaatatcattttgtttttgtc 1415865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5427702 - 5427661
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  5427702 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 5427661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31788723 - 31788764
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  31788723 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 31788764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30923290 - 30923250
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  30923290 actctatcaatttgaatgaatgaatatcattttgtttttgt 30923250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31193169 - 31193129
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  31193169 actctatcgatttgaatgaatgaatatcgttttgtttttgt 31193129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38445433 - 38445473
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  38445433 actctatcgatttgaatgaatgaatatcgttttgtttttgt 38445473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 2808282 - 2808247
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  2808282 tcgatttgaatgaatgaatatcattttgtttttgtc 2808247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 4193109 - 4193144
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  4193109 tcgatttgaatgaatgaatatcattttgtttttgtc 4193144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 22422000 - 22422035
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  22422000 tcgatttgaatgaatgaatatcattttgtttttgtc 22422035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 25087307 - 25087342
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  25087307 tcgatttgaatgaatgaatatcattttgtttttgtc 25087342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 27248960 - 27248925
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  27248960 tcgatttgaatgaatgaatatcattttgtttttgtc 27248925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 31580464 - 31580429
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  31580464 tcgatttgaatgaatgaatatcattttgtttttgtc 31580429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 32448448 - 32448409
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  32448448 tctatcaatttgaatgaatgaatatcattttgtttttgtc 32448409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 32913500 - 32913535
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  32913500 tcgatttgaatgaatgaatatcattttgtttttgtc 32913535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 33923974 - 33924013
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  33923974 tctatcgatttgaatgaatgaatatcgttttgtttttgtc 33924013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 36234270 - 36234305
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  36234270 tcgatttgaatgaatgaatatcattttgtttttgtc 36234305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 4041424 - 4041386
Alignment:
Q  4 ctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  4041424 ctatcgatttgaatgaatgaatatcattttatttttgtc 4041386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 4228395 - 4228429
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  4228395 tcgatttgaatgaatgaatatcattttgtttttgt 4228429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 21570217 - 21570183
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  21570217 tcgatttgaatgaatgaatatcattttgtttttgt 21570183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4779020 - 4779061
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||  |||||||||||||    
T  4779020 actctatcgatttgaatgaatgaatatagttttgtttttgtc 4779061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 7646749 - 7646786
Alignment:
Q  5 tatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  7646749 tatcgatttgaatgaatgaatatcgttttgtttttgtc 7646786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9374378 - 9374337
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||| |||||||||||||||||| ||| |||||||||||||    
T  9374378 actctgtcgatttgaatgaatgaatatcgttttgtttttgtc 9374337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12554002 - 12553961
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| |||||||| ||||||||    
T  12554002 actctatcaatttgaatgaatgaatatcattttatttttgtc 12553961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18763735 - 18763776
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||| |||||||||||||||| ||| |||||||||||||    
T  18763735 actctattgatttgaatgaatgaatatcgttttgtttttgtc 18763776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36942955 - 36942914
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||| |||||||||||||||| ||| |||||||||||||    
T  36942955 actctattgatttgaatgaatgaatatcgttttgtttttgtc 36942914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37876439 - 37876398
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  37876439 actctatcaatttgaatgaatgaatatcgttttgtttttgtc 37876398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41328006 - 41328047
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  41328006 actctatcaatttgaatgaatgaatatcgttttgtttttgtc 41328047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 459091 - 459051
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  459091 actctatcgatttgaatgaatgaatatcgttttatttttgt 459051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 4100599 - 4100635
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  4100599 tctatcgatttgaatgaatgaatatcgttttgttttt 4100635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 26025302 - 26025270
Alignment:
Q  10 atttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||| |||||||||||||||||    
T  26025302 atttgaatgaatgaatatcattttgtttttgtc 26025270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36692141 - 36692181
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||| | ||| ||||||||||||    
T  36692141 actctatcgatttgaatgaatgtatatcgttttgtttttgt 36692181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 38575295 - 38575263
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||||||||||||||| ||||||||||||||    
T  38575295 tcgatttgaatgaatgaatatcattttgttttt 38575263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 21695368 - 21695315
Alignment:
Q  140 ctcttctatatcatttttcttgtcatctaattcgaaatgaaaaatattgacaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21695368 ctcttctatatcatttttcttgtcatctaattcgaaatgaaaaatattgacaca 21695315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41081519 - 41081478
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  41081519 actctatcgatttgaatgaatgaatatcattttgtttttgtc 41081478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49504427 - 49504386
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  49504427 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 49504386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11462314 - 11462274
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  11462314 actctatcgatttgaatgaatgaatatcgttttgtttttgt 11462274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14872899 - 14872939
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  14872899 actctatcgatttaaatgaatgaatatcattttgtttttgt 14872939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 24583211 - 24583247
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||||||||||||||||||| ||||||||||||||    
T  24583211 tctatcgatttgaatgaatgaatatcattttgttttt 24583247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 24583407 - 24583443
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||||||||||||||||||| ||||||||||||||    
T  24583407 tctatcgatttgaatgaatgaatatcattttgttttt 24583443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36894240 - 36894200
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  36894240 actctatcgatttgaatgaatgaatatcgttttgtttttgt 36894200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 5984078 - 5984117
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  5984078 tctatcgatttgaatgaatgaatatcgttttgtttttgtc 5984117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 9687014 - 9686979
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  9687014 tcgatttgaatgaatgaatatcattttgtttttgtc 9686979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 20266574 - 20266609
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  20266574 tcgatttgaatgaatgaatatcattttgtttttgtc 20266609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 30879347 - 30879382
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  30879347 tcgatttgaatgaatgaatatcattttgtttttgtc 30879382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 34519400 - 34519435
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  34519400 tcgatttgaatgaatgaatatcattttgtttttgtc 34519435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 34878108 - 34878069
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  34878108 tctatcgatttgaatgaatgaatatcgttttgtttttgtc 34878069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 48217709 - 48217744
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  48217709 tcgatttgaatgaatgaatatcattttgtttttgtc 48217744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 21687640 - 21687678
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  21687640 tctatcgatttgaatgaatgaatatcgttttgtttttgt 21687678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 35584432 - 35584398
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  35584432 tcgatttgaatgaatgaatatcattttgtttttgt 35584398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26535596 - 26535637
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  26535596 actctatcaatttgaatgaatgaatatcgttttgtttttgtc 26535637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27456749 - 27456790
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  27456749 actctatcaatttgaatgaatgaatatcgttttgtttttgtc 27456790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 27914914 - 27914881
Alignment:
Q  9 gatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||| |||||||||||||||||    
T  27914914 gatttgaatgaatgaatatcattttgtttttgtc 27914881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 30712116 - 30712083
Alignment:
Q  9 gatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||| |||||||||||||||||    
T  30712116 gatttgaatgaatgaatatcattttgtttttgtc 30712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32395257 - 32395298
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| ||||| ||| |||||||||||||    
T  32395257 actctatcgatttgaatggatgaatatcgttttgtttttgtc 32395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 33816975 - 33816942
Alignment:
Q  9 gatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||| |||||||||||||||||    
T  33816975 gatttgaatgaatgaagatcattttgtttttgtc 33816942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 33876445 - 33876412
Alignment:
Q  9 gatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||| |||||||||||||||||    
T  33876445 gatttgaatgaatgaagatcattttgtttttgtc 33876412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44915899 - 44915940
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| |||||||| ||||||||    
T  44915899 actctatcaatttgaatgaatgaatatcattttatttttgtc 44915940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10776293 - 10776253
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||| ||||||||||| ||| ||||||||||||||||    
T  10776293 actctatcaatttgaatgaacgaatatcattttgtttttgt 10776253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 18569120 - 18569088
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||||||||||||||| ||||||||||||||    
T  18569120 tcgatttgaatgaatgaatatcattttgttttt 18569088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44637683 - 44637723
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  44637683 actctatcgattggaatgaatgaatatcattttatttttgt 44637723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 606462 - 606503
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  606462 actctatcgatttgaatgaatgaatatcattttgtttttgtc 606503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7515035 - 7514994
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  7515035 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 7514994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32327052 - 32327011
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  32327052 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 32327011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12170726 - 12170766
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  12170726 actctatcgatttgaatgaatgaatatcgttttgtttttgt 12170766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 7028123 - 7028158
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  7028123 tcgatttgaatgaatgaatatcattttgtttttgtc 7028158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 8497236 - 8497271
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  8497236 tcgatttgaatgaatgaatatcattttgtttttgtc 8497271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 23947126 - 23947091
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  23947126 tcgatttgaatgaatgaatatcattttgtttttgtc 23947091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 28634925 - 28634887
Alignment:
Q  4 ctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  28634925 ctatcgatttgaatgaatgaatatcagtttgtttttgtc 28634887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3913406 - 3913365
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||| ||||||||    
T  3913406 actctatcgatttgaatgaatgaatatcgttttatttttgtc 3913365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9341483 - 9341442
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  9341483 actctatcgatttgaatgaatgagtatcgttttgtttttgtc 9341442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 14174899 - 14174862
Alignment:
Q  5 tatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  14174899 tatcgatttgaatgaatgaatatcgttttgtttttgtc 14174862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 14179435 - 14179398
Alignment:
Q  5 tatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  14179435 tatcgatttgaatgaatgaatatcgttttgtttttgtc 14179398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33053000 - 33052959
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  33053000 actctatcaatttgaatgaatgaatatcgttttgtttttgtc 33052959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 1450564 - 1450528
Alignment:
Q  5 tatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||| |||||||| |||||||    
T  1450564 tatcgatttgaatgaatgaatatcattttatttttgt 1450528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 7880911 - 7880879
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||||||||||||||| ||||||||||||||    
T  7880911 tcgatttgaatgaatgaatatcattttgttttt 7880879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 29319700 - 29319668
Alignment:
Q  10 atttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||| |||||||||||||||||    
T  29319700 atttgaatgaatgaatatcattttgtttttgtc 29319668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34185526 - 34185486
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||| ||||||||||||||| |||||||| |||||||    
T  34185526 actctatcaatttgaatgaatgaatatcattttatttttgt 34185486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 34489465 - 34489501
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgttttt 39  Q
    ||||||||||||||||||| || ||||||||||||||    
T  34489465 tctatcgatttgaatgaataaatatcattttgttttt 34489501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13634392 - 13634433
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  13634392 actctatcgatttgaatgaatgaatatcattttgtttttgtc 13634433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4142596 - 4142555
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  4142596 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 4142555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19853344 - 19853303
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  19853344 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 19853303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21686074 - 21686033
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  21686074 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 21686033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2521056 - 2521096
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  2521056 actctatcgatttgaatgaatgaatatcgttttgtttttgt 2521096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26633503 - 26633463
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  26633503 actctatcgatttgaatgaatgaatatcgttttgtttttgt 26633463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 56040478 - 56040438
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  56040478 actctatcgatttgaatgaatgaatatcgttttgtttttgt 56040438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 2115397 - 2115362
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  2115397 tcgatttgaatgaatgaatatcattttgtttttgtc 2115362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 6155039 - 6155000
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  6155039 tctatcaatttgaatgaatgaatatcattttgtttttgtc 6155000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 9284191 - 9284226
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  9284191 tcgatttgaatgaatgaatatcattttgtttttgtc 9284226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 9528686 - 9528651
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  9528686 tcgatttgaatgaatgaatatcattttgtttttgtc 9528651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 20569537 - 20569572
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  20569537 tcgatttgaatgaatgaatatcattttgtttttgtc 20569572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 25274163 - 25274198
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  25274163 tcgatttgaatgaatgaatatcattttgtttttgtc 25274198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 47320243 - 47320204
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  47320243 tctatcgatttgaatgaatgaatataattttgtttttgtc 47320204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 12265738 - 12265776
Alignment:
Q  4 ctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  12265738 ctatcgatttgaatgaatgaatatcagtttgtttttgtc 12265776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 53616459 - 53616425
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  53616459 tcgatttgaatgaatgaatatcattttgtttttgt 53616425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17949155 - 17949114
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  17949155 actctatcgatttgaatgaatgaatatcgttttgtttctgtc 17949114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17953007 - 17952966
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  17953007 actctatcgatttgaatgaatgaatatcgttttgtttctgtc 17952966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32766791 - 32766832
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||  |||||||||||||    
T  32766791 actctatcgatttgaatgaatgaatattgttttgtttttgtc 32766832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32952573 - 32952540
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  32952573 actctatcgatttgaatgaatgaatatcattttg 32952540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 565
Target Start/End: Original strand, 45440000 - 45440057
Alignment:
Q  508 tgatgagattaattgaaaggagagaatctaaataaaccgccatgtctgtgatgtccat 565  Q
    ||||||| |||||||||||||| ||||||||||||||  |||| |||| |||| ||||    
T  45440000 tgatgaggttaattgaaaggagggaatctaaataaacaaccatatctgagatgcccat 45440057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46990946 - 46990909
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttt 38  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  46990946 actctatcgatttgaatgaatgaatatcattttttttt 46990909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 53811295 - 53811336
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||| |||||||||| ||| |||||||||||||    
T  53811295 actctatcgatttaaatgaatgaatatcgttttgtttttgtc 53811336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21533641 - 21533600
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  21533641 actctatcgatttgaatgaatgaatatcattttgtttttgtc 21533600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48650566 - 48650527
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  48650566 actctatcgatttgaatgaatgaatatcattttgtttttg 48650527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6954528 - 6954487
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  6954528 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 6954487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20464797 - 20464756
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  20464797 actctatcaatttgaatgaatgaatatcattttgtttttgtc 20464756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43017144 - 43017185
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  43017144 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 43017185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52922949 - 52922908
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  52922949 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 52922908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40487581 - 40487621
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  40487581 actctatcgatttgaatgaatgaatatcgttttgtttttgt 40487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 628754 - 628715
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  628754 tctatcaatttgaatgaatgaatatcattttgtttttgtc 628715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 2342713 - 2342748
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  2342713 tcgatttgaatgaatgaatatcattttgtttttgtc 2342748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 4178830 - 4178865
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  4178830 tcgatttgaatgaatgaatatcattttgtttttgtc 4178865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 25162701 - 25162736
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  25162701 tcgatttgaatgaatgaatatcattttgtttttgtc 25162736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 38854848 - 38854813
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  38854848 tcgatttgaatgaatgaatatcattttgtttttgtc 38854813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 47041878 - 47041839
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  47041878 tctatctatttgaatgaatgaatatcattttgtttttgtc 47041839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 29503722 - 29503760
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  29503722 tctattgatttgaatgaatgaatatcattttgtttttgt 29503760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 32607734 - 32607768
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  32607734 tcgatttgaatgaatgaatatcattttgtttttgt 32607768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 44907208 - 44907174
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  44907208 tcgatttgaatgaatgaatatcattttgtttttgt 44907174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 45568277 - 45568239
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  45568277 actctatcgatttgaatgaatgaatatcgttttgttttt 45568239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 50611227 - 50611193
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  50611227 tcgatttgaatgaatgaatatcattttgtttttgt 50611193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 9797362 - 9797325
Alignment:
Q  5 tatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  9797362 tatcgatttgaatgaatgaatatcgttttgtttttgtc 9797325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10108492 - 10108533
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||| ||||||||    
T  10108492 actctatcgatttgaatgaatgaatatcgttttatttttgtc 10108533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10229732 - 10229773
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||| ||||||||    
T  10229732 actctatcgatttgaatgaatgaatatcgttttatttttgtc 10229773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10233326 - 10233367
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||| ||||||||    
T  10233326 actctatcgatttgaatgaatgaatatcgttttatttttgtc 10233367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36910598 - 36910557
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||| ||||||||    
T  36910598 actctatcgatttgaatgaatgaatatcgttttatttttgtc 36910557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43488423 - 43488386
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttt 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  43488423 actctatcgatttgaatgaatgaatatcgttttgtttt 43488386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 3085121 - 3085085
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  3085121 tctatcaatttgaatgaatgaatatcattttgttttt 3085085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9998723 - 9998763
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  9998723 actctatcgatttgaatgaatgaatatcgttttatttttgt 9998763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 17238073 - 17238105
Alignment:
Q  10 atttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||| |||||||||||||||||    
T  17238073 atttgaatgaatgaatatcattttgtttttgtc 17238105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23799780 - 23799740
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||| ||||||||||||||| ||| ||||||||||||    
T  23799780 actctatcaatttgaatgaatgaatatcgttttgtttttgt 23799740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 46178831 - 46178867
Alignment:
Q  5 tatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  46178831 tatcgatttgaatgaatgaaaatcgttttgtttttgt 46178867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46304353 - 46304313
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||| ||||||||||||||| ||| ||||||||||||    
T  46304353 actctatcaatttgaatgaatgaatatcgttttgtttttgt 46304313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 1236526 - 1236487
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  1236526 tctatcgatttgaatgaatgaatatcattttgtttttgtc 1236487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10377933 - 10377974
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  10377933 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 10377974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 3240642 - 3240681
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  3240642 tctatcaatttgaatgaatgaacatcgttttgtttttgtc 3240681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 14906732 - 14906697
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  14906732 tcgatttgaatgaatgaatatcattttgtttttgtc 14906697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 30568149 - 30568110
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  30568149 tctatcaatttgaatgaatgaatatcattttgtttttgtc 30568110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40211130 - 40211091
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  40211130 actctatcgatttgaatgaatgaatatcgttttgtttttg 40211091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33214501 - 33214463
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  33214501 actctatcgatttgaatgaatgaatatcgttttgttttt 33214463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7883071 - 7883030
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||| |||||||||||||||| ||| |||||||||||||    
T  7883071 actctattgatttgaatgaatgaatatcgttttgtttttgtc 7883030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23230902 - 23230943
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| ||||| |||||||    
T  23230902 actctatcgatttgaatgaatgaatatcgttttgcttttgtc 23230943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 28240113 - 28240150
Alignment:
Q  4 ctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  28240113 ctatcgatttgaatgaatgaatatcagtttgtttttgt 28240150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 201186 - 201148
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  201186 tctatcgatttgaatgaatgaatatcattttgtttttgt 201148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28044588 - 28044547
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  28044588 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 28044547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48316651 - 48316610
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  48316651 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 48316610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12141139 - 12141099
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  12141139 actctatcgatttgaatgaatgaatatcgttttgtttttgt 12141099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 21266655 - 21266695
Alignment:
Q  2 ctctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  21266655 ctctctcgatttgaatgaatgaatatcattttgtttttgtc 21266695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48061681 - 48061721
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  48061681 actctatcgatttgaatgaatgaatatcgttttgtttttgt 48061721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 1448641 - 1448606
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  1448641 tcgatttgaatgaatgaatatcattttgtttttgtc 1448606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 12502061 - 12502026
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  12502061 tcgatttgaatgaatgaatatcattttgtttttgtc 12502026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 12527695 - 12527660
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  12527695 tcgatttgaatgaatgaatatcattttgtttttgtc 12527660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 14627707 - 14627672
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  14627707 tcgatttgaatgaatgaatatcattttgtttttgtc 14627672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 26492633 - 26492668
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  26492633 tcgatttgaatgaatgaatatcattttgtttttgtc 26492668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 42066871 - 42066836
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  42066871 tcgatttgaatgaatgaatatcattttgtttttgtc 42066836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 32684936 - 32684970
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  32684936 tcgatttgaatgaatgaatatcattttgtttttgt 32684970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 34773979 - 34774013
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  34773979 tcgatttgaatgaatgaatatcattttgtttttgt 34774013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 45198842 - 45198808
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  45198842 tcgatttgaatgaatgaatatcattttgtttttgt 45198808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17611653 - 17611694
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  17611653 actctatcaatttgaatgaatgaatatcgttttgtttttgtc 17611694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3267049 - 3267009
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||| | ||||||||||||||| ||||||||||||||||    
T  3267049 actctaacaatttgaatgaatgaatatcattttgtttttgt 3267009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 20083604 - 20083640
Alignment:
Q  5 tatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    ||||||||||||||||| || ||||||||||||||||    
T  20083604 tatcgatttgaatgaataaatatcattttgtttttgt 20083640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 23425179 - 23425147
Alignment:
Q  10 atttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||| |||||||||||||||||    
T  23425179 atttgaatgaatgaatatcattttgtttttgtc 23425147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35261559 - 35261599
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||| ||||||||||||||| |||||| |||||||||    
T  35261559 actctatcaatttgaatgaatgaatatcattctgtttttgt 35261599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 39328621 - 39328585
Alignment:
Q  6 atcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  39328621 atcgatttgaatgaatgaatatcgttttgtttttgtc 39328585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6011970 - 6011929
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  6011970 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 6011929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9113557 - 9113516
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  9113557 actctatcgatttgaatgaatgaatatcgttttgtttttgtc 9113516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24229616 - 24229576
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  24229616 actctatcgatttgaatgaatgaatatcgttttgtttttgt 24229576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 8088043 - 8088004
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  8088043 tctatcaatttgaatgaatgaatatcattttgtttttgtc 8088004  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 13422190 - 13422229
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  13422190 tctatcaatttgaatgaatgaatatcattttgtttttgtc 13422229  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 14726291 - 14726252
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  14726291 tctatcgatttgaatgaatgaatatcgttttgtttttgtc 14726252  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 21060092 - 21060057
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  21060092 tcgatttgaatgaatgaatatcattttgtttttgtc 21060057  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 34881987 - 34882022
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  34881987 tcgatttgaatgaatgaatatcattttgtttttgtc 34882022  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 38007615 - 38007654
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  38007615 tctatcgatttgaatgaatgaatatcgttttgtttttgtc 38007654  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 781658 - 781692
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  781658 tcgatttgaatgaatgaatatcattttgtttttgt 781692  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8096331 - 8096293
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgttttt 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  8096331 actctatcgatttgaatgaatgaatatcgttttgttttt 8096293  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 35851055 - 35851093
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  35851055 tctattgatttgaatgaatgaatatcattttgtttttgt 35851093  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13007485 - 13007526
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  13007485 actctatcaatttgaatgaatgaatatcgttttgtttttgtc 13007526  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 18677275 - 18677242
Alignment:
Q  7 tcgatttgaatgaatgaacatcattttgtttttg 40  Q
    |||||||||||||||||| |||||||||||||||    
T  18677275 tcgatttgaatgaatgaatatcattttgtttttg 18677242  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26825686 - 26825727
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    |||||||||||||||||||||||| ||| |||| ||||||||    
T  26825686 actctatcgatttgaatgaatgaatatcgttttatttttgtc 26825727  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27576200 - 27576160
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  27576200 actctatcgatttgaatgaatgaatattgttttgtttttgt 27576160  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 30371894 - 30371926
Alignment:
Q  10 atttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||| |||||||||||||||||    
T  30371894 atttgaatgaatgaatatcattttgtttttgtc 30371926  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 36057139 - 36057103
Alignment:
Q  5 tatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||| |||||||| |||||||    
T  36057139 tatcgatttgaatgaatgaatatcattttatttttgt 36057103  T

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Target: scaffold0884 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 1803 - 1765
Alignment:
Q  3 tctatcgatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  1803 tctatcgatttgaatgaatgaatatcattttgttattgt 1765  T

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Target: scaffold0445 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1629 - 1670
Alignment:
Q  1 actctatcgatttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||| |||||||||||||||| ||| |||||||||||||    
T  1629 actctattgatttgaatgaatgaatatcgttttgtttttgtc 1670  T

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Target: scaffold0146 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 16126 - 16094
Alignment:
Q  10 atttgaatgaatgaacatcattttgtttttgtc 42  Q
    ||||||||||||||| |||||||||||||||||    
T  16126 atttgaatgaatgaatatcattttgtttttgtc 16094  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 83244 - 83212
Alignment:
Q  9 gatttgaatgaatgaacatcattttgtttttgt 41  Q
    |||||||||||||||| ||||||||||||||||    
T  83244 gatttgaatgaatgaatatcattttgtttttgt 83212  T

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