View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7230_low_7 (Length: 264)

Name: NF7230_low_7
Description: NF7230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7230_low_7
NF7230_low_7
[»] chr4 (2 HSPs)
chr4 (15-255)||(25109594-25109833)
chr4 (135-249)||(3938201-3938315)
[»] chr5 (3 HSPs)
chr5 (135-249)||(39045195-39045309)
chr5 (135-243)||(7280100-7280208)
chr5 (195-246)||(41701214-41701265)
[»] chr1 (2 HSPs)
chr1 (20-129)||(45516590-45516699)
chr1 (20-129)||(44093782-44093891)
[»] chr3 (3 HSPs)
chr3 (20-129)||(49147877-49147986)
chr3 (135-249)||(3423246-3423360)
chr3 (135-249)||(22163917-22164031)
[»] chr2 (2 HSPs)
chr2 (16-129)||(35296964-35297077)
chr2 (20-129)||(14688491-14688600)
[»] chr8 (3 HSPs)
chr8 (20-127)||(29259107-29259214)
chr8 (20-129)||(13821265-13821374)
chr8 (195-258)||(28574297-28574360)
[»] scaffold0015 (1 HSPs)
scaffold0015 (20-129)||(13900-14009)
[»] chr6 (5 HSPs)
chr6 (20-129)||(16498397-16498506)
chr6 (142-249)||(35164294-35164401)
chr6 (16-74)||(28493627-28493685)
chr6 (16-74)||(29806036-29806094)
chr6 (20-129)||(31932179-31932288)
[»] chr7 (2 HSPs)
chr7 (59-129)||(16768109-16768179)
chr7 (135-249)||(33631415-33631529)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 25109594 - 25109833
Alignment:
Q  15 tatagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaa 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  25109594 tatagacatgaaactgatt-aaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagcaatttccacacaattgaagctaatcgccaa 25109692  T
Q  115 ctttaaaccttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||||| ||||||    
T  25109693 ctttaaaccttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgctgatgctgtgtggacaggttctgcgagatggatgaatatg 25109792  T
Q  215 agcatcaatactagcaactgacagtctattttgcatgatgt 255  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  25109793 agcatcaatactagcaactgacagtctattttgcattatgt 25109833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 3938315 - 3938201
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3938315 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3938216  T
Q  235 acagtctattttgca 249  Q
     || |||||||||||    
T  3938215 gcattctattttgca 3938201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 39045309 - 39045195
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||    
T  39045309 atgaaagtcattctcatttattttttacttgtgaatttgttgatgctgtgtggacaggttctatgagatggatgaatatgagcatcaatactagcagctg 39045210  T
Q  235 acagtctattttgca 249  Q
    | |||||||||||||    
T  39045209 agagtctattttgca 39045195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 7280100 - 7280208
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||||| || ||||| |||||||| || | ||||||||||||||||||||||  ||||||||||||||||    
T  7280100 atgaaactcattctcacctgtttttttcttgtgaatatgctgatgttgtgtggaaaggtgctatgagatggataaatatgagtgtcaatactagcaactg 7280199  T
Q  235 acagtctat 243  Q
     || |||||    
T  7280200 gcaatctat 7280208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 41701265 - 41701214
Alignment:
Q  195 ctatgagatggataaatatgagcatcaatactagcaactgacagtctatttt 246  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| ||||||||    
T  41701265 ctatgagatggatgaacttgagcatcaatactagcaactgacaatctatttt 41701214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 45516590 - 45516699
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| | |||||| ||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||| |||    
T  45516590 acatgaaaatgatttaaatcatctttgatgaagttgactgcaagaagggaatctgaatagcacgccaattcctcacaattgaagctgatcgccaacctta 45516689  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  45516690 acccttgata 45516699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 44093891 - 44093782
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| |||||||| |||||||| || ||||  ||||| |||||||||| |||||| ||||| | ||||||| |||    
T  44093891 acatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagtgagtctgaatagcacgccaattcctaacaatttaagctgaccgccaacctta 44093792  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  44093791 acccttgata 44093782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 49147877 - 49147986
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    ||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| |||||| |||||||||| ||||| ||||||||| |||    
T  49147877 acatggaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaatacctcacaatttaagctgatcgccaacctta 49147976  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  49147977 acccttgata 49147986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 3423360 - 3423246
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | |||||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3423360 atgaaactcattctcacctctttttttcttgtgattatgttgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3423261  T
Q  235 acagtctattttgca 249  Q
     || |||||||||||    
T  3423260 gcattctattttgca 3423246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 22163917 - 22164031
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  22163917 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 22164016  T
Q  235 acagtctattttgca 249  Q
     || |||||||||||    
T  22164017 gcattctattttgca 22164031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 35297077 - 35296964
Alignment:
Q  16 atagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaac 115  Q
    |||||||||||| ||||||||||| || ||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | |||||||    
T  35297077 atagacatgaaaatgatttaaatcatcattgatcaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaac 35296978  T
Q  116 tttaaaccttgata 129  Q
     |||| ||||||||    
T  35296977 cttaacccttgata 35296964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 14688600 - 14688491
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| |||||||  ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||    
T  14688600 acatgaaaatgatttaaatcatctttgatgaggttgattgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaacctta 14688501  T
Q  120 aaccttgata 129  Q
    | | ||||||    
T  14688500 acctttgata 14688491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 29259214 - 29259107
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||    
T  29259214 acatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaacctta 29259115  T
Q  120 aaccttga 127  Q
    | ||||||    
T  29259114 acccttga 29259107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 13821374 - 13821265
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| | ||||||||||||||| ||| | ||||||||| |||    
T  13821374 acatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgtcaattcctcacaatttaagttgatcgccaacctta 13821275  T
Q  120 aaccttgata 129  Q
    | | ||||||    
T  13821274 accattgata 13821265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 28574360 - 28574297
Alignment:
Q  195 ctatgagatggataaatatgagcatcaatactagcaactgacagtctattttgcatgatgtcca 258  Q
    ||||||||||||| ||||||||  ||||||||||||| || || |||||||||||  |||||||    
T  28574360 ctatgagatggatgaatatgagtgtcaatactagcaattggcaatctattttgcaatatgtcca 28574297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 14009 - 13900
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| | ||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||    
T  14009 acatgaaaataatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaacctta 13910  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  13909 acccttgata 13900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 16498397 - 16498506
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| ||||| |  ||||||||||| ||||  ||||| ||||||||||||||||| ||| ||| ||||||| |||    
T  16498397 acatgaaaatgatttaaatcatctttgatgaggttcattgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttaaccgccaacctta 16498496  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  16498497 acccttgata 16498506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 35164401 - 35164294
Alignment:
Q  142 tcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactgacagtct 241  Q
    |||||||||| |||||||||||| ||||| |||||||| ||||||||||| | |||| |  ||||| ||||| ||| |||||| |||||| || ||||||    
T  35164401 tcattctcatctattttttacttgtgaatatgttgatgttgtgtggacaggtgctataaattggatgaatataagcgtcaatattagcaattggcagtct 35164302  T
Q  242 attttgca 249  Q
    ||| ||||    
T  35164301 attctgca 35164294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 28493685 - 28493627
Alignment:
Q  16 atagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctg 74  Q
    |||||||||||| ||||||||||| |||||||| ||||||||| ||||||| |||||||    
T  28493685 atagacatgaaaatgatttaaatcatctttgatgaggttgacaacaagaagagaatctg 28493627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 29806094 - 29806036
Alignment:
Q  16 atagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctg 74  Q
    |||||||||||| ||||||||||| |||||||| ||||||||| ||||||| |||||||    
T  29806094 atagacatgaaaatgatttaaatcatctttgatgaggttgacaacaagaagagaatctg 29806036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 31932179 - 31932288
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||| ||||| || ||||| || |||||||  ||||||||||| |  |||||| ||||||| ||| ||||||| ||||| |||| |||||    
T  31932179 acatgaaagtgattcaaatcctccttgatgagtttgacagtgagaagggaatccgaatagcaaaccaattcgtcaaaattgaaactaatagccagcttta 31932278  T
Q  120 aaccttgata 129  Q
     || ||||||    
T  31932279 gactttgata 31932288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 16768109 - 16768179
Alignment:
Q  59 gcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 129  Q
    ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||||||||    
T  16768109 gcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacccttgata 16768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 33631529 - 33631415
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  33631529 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 33631430  T
Q  235 acagtctattttgca 249  Q
     || |||||||||||    
T  33631429 gcattctattttgca 33631415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University