View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7231_high_11 (Length: 285)

Name: NF7231_high_11
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7231_high_11
NF7231_high_11
[»] scaffold0053 (2 HSPs)
scaffold0053 (9-199)||(30979-31169)
scaffold0053 (213-271)||(30891-30949)
[»] chr7 (11 HSPs)
chr7 (9-199)||(42080812-42081002)
chr7 (9-149)||(45406697-45406838)
chr7 (213-271)||(42081040-42081098)
chr7 (9-149)||(4119951-4120091)
chr7 (71-120)||(22528934-22528983)
chr7 (85-177)||(38788964-38789060)
chr7 (78-181)||(17474750-17474857)
chr7 (78-181)||(17510234-17510341)
chr7 (78-181)||(17542873-17542980)
chr7 (78-181)||(17578357-17578464)
chr7 (45-149)||(43989682-43989786)
[»] chr3 (7 HSPs)
chr3 (9-156)||(431961-432109)
chr3 (33-149)||(20934967-20935083)
chr3 (71-149)||(50331967-50332045)
chr3 (46-120)||(32970441-32970516)
chr3 (33-149)||(17764121-17764237)
chr3 (33-149)||(19065441-19065557)
chr3 (85-149)||(42400405-42400469)
[»] chr4 (7 HSPs)
chr4 (9-181)||(42757527-42757701)
chr4 (71-179)||(13228658-13228770)
chr4 (71-149)||(50158188-50158266)
chr4 (130-177)||(35308158-35308209)
chr4 (83-148)||(24183445-24183510)
chr4 (78-115)||(39976693-39976730)
chr4 (85-149)||(28475656-28475720)
[»] chr2 (6 HSPs)
chr2 (9-178)||(6466121-6466287)
chr2 (11-179)||(3395400-3395573)
chr2 (71-134)||(36727642-36727705)
chr2 (11-147)||(36720068-36720205)
chr2 (108-155)||(30637861-30637908)
chr2 (85-149)||(19040697-19040761)
[»] scaffold1315 (1 HSPs)
scaffold1315 (9-170)||(489-652)
[»] scaffold1293 (1 HSPs)
scaffold1293 (9-170)||(1419-1582)
[»] chr8 (3 HSPs)
chr8 (9-172)||(18953297-18953464)
chr8 (72-149)||(10901452-10901529)
chr8 (78-115)||(21587045-21587082)
[»] chr5 (3 HSPs)
chr5 (9-149)||(9012660-9012801)
chr5 (9-145)||(38015878-38016015)
chr5 (9-58)||(24539672-24539721)
[»] chr6 (3 HSPs)
chr6 (80-134)||(31737233-31737287)
chr6 (71-149)||(1599682-1599760)
chr6 (85-149)||(7428507-7428571)
[»] chr1 (5 HSPs)
chr1 (71-172)||(43387108-43387213)
chr1 (79-149)||(22636335-22636405)
chr1 (33-149)||(20306703-20306819)
chr1 (87-177)||(16851931-16852024)
chr1 (85-149)||(40946519-40946583)
[»] scaffold0051 (1 HSPs)
scaffold0051 (76-117)||(19051-19092)
[»] scaffold1750 (1 HSPs)
scaffold1750 (73-149)||(295-370)
[»] scaffold1345 (1 HSPs)
scaffold1345 (73-149)||(1848-1923)


Alignment Details
Target: scaffold0053 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 31169 - 30979
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctcctcatatgtttctcaacatctactcttgcatctaatgtcaa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31169 tgagatcgacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctcctcatatgtttctcaacatctactcttgcatctaatgtcaa 31070  T
Q  109 attttaactcacgactgacacattaatatctctccattaagagactcttcgtgtctgtgatccatcaccaagacccgccgccctccacaac 199  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31069 attttaactcacgactgacaaattaatatctctccattaagagactcttcgtgtctgtgatccatcaccaagacccgccgccctccacaac 30979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 30949 - 30891
Alignment:
Q  213 aatgttgaaccgagatgtgataccactgttggctcttatatgtaagtcaacattgatgt 271  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  30949 aatgttgaaccgagatgtgataccaccgttggctcttatatgcaagtcaacaatgatgt 30891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 42080812 - 42081002
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctcctcatatgtttctcaacatctactcttgcatctaatgtcaa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080812 tgagatcgacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctcctcatatgtttctcaacatctactcttgcatctaatgtcaa 42080911  T
Q  109 attttaactcacgactgacacattaatatctctccattaagagactcttcgtgtctgtgatccatcaccaagacccgccgccctccacaac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||    
T  42080912 attttaactcacgactgacacattaatatctctccattaagagactcttcgtatatgtgatccatcaccaagacctgccgccctccacaac 42081002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 45406838 - 45406697
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctcc-tcatatgtttctcaacatctactcttgcatctaatgtca 107  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||    
T  45406838 tgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacatctcctcttacatcaaatgtca 45406739  T
Q  108 aattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||||||||| | ||||||||||| || |||||||||||    
T  45406738 aattttaactcacaattgacacattaacatttctccattaag 45406697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 42081040 - 42081098
Alignment:
Q  213 aatgttgaaccgagatgtgataccactgttggctcttatatgtaagtcaacattgatgt 271  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  42081040 aatgttgaaccgagatgtgataccaccgttgggtcttatatgcaagtcaacattgatgt 42081098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 4119951 - 4120091
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtca 107  Q
    |||||| || ||||| |||||| |||||||||||| ||||||| |||| ||   | ||| || ||||||| ||||||||| ||| ||| ||| ||||| |    
T  4119951 tgagattgatatcacatcttcatccaaagtcctaaggcattagctataagggcca-ctcacttatatgttgctcaacatccacttttgaatccaatgtga 4120049  T
Q  108 aattttaactcacgactgacacattaatatctctccattaag 149  Q
    |||||||||| ||   |||||| ||| |||||||||||||||    
T  4120050 aattttaactaacacttgacacgttagtatctctccattaag 4120091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 22528983 - 22528934
Alignment:
Q  71 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcac 120  Q
    |||||||||||||||| |||||||||||  ||||| ||||||||||||||    
T  22528983 atatgtttctcaacatttactcttgcatacaatgtaaaattttaactcac 22528934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 38788964 - 38789060
Alignment:
Q  85 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccatcacc 177  Q
    ||||||||||||||  ||||| ||||||||||| ||   | ||||||||| ||||||||||||||    ||||||| ||||| ||||||||| ||||    
T  38788964 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactctccgtgtttgtgatccaccacc 38789060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 17474750 - 17474857
Alignment:
Q  78 tctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccat 173  Q
    ||||||||||||||||| |||  ||||| ||| |||||||||    ||||||||||| ||||||||| ||||    |||||||| ||| |||||||| |     
T  17474750 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgac 17474849  T
Q  174 caccaaga 181  Q
    ||||||||    
T  17474850 caccaaga 17474857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 17510234 - 17510341
Alignment:
Q  78 tctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccat 173  Q
    ||||||||||||||||| |||  ||||| ||| |||||||||    ||||||||||| ||||||||| ||||    |||||||| ||| |||||||| |     
T  17510234 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgac 17510333  T
Q  174 caccaaga 181  Q
    ||||||||    
T  17510334 caccaaga 17510341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 17542980 - 17542873
Alignment:
Q  78 tctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccat 173  Q
    ||||||||||||||||| |||  ||||| ||| |||||||||    ||||||||||| ||||||||| ||||    |||||||| ||| |||||||| |     
T  17542980 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgac 17542881  T
Q  174 caccaaga 181  Q
    ||||||||    
T  17542880 caccaaga 17542873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 17578464 - 17578357
Alignment:
Q  78 tctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccat 173  Q
    ||||||||||||||||| |||  ||||| ||| |||||||||    ||||||||||| ||||||||| ||||    |||||||| ||| |||||||| |     
T  17578464 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgac 17578365  T
Q  174 caccaaga 181  Q
    ||||||||    
T  17578364 caccaaga 17578357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 43989786 - 43989682
Alignment:
Q  45 gcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctcc 143  Q
    |||||| ||||||| || ||||| || | |||||||||| |||||||| ||||||  ||| | ||||||||||||||   ||||||||||| |||||||     
T  43989786 gcattatgtatatgaatcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctca 43989688  T
Q  144 attaag 149  Q
    ||||||    
T  43989687 attaag 43989682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 432109 - 431961
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatct-cctcatatgtttctcaacatctactcttgcatctaatgtca 107  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||     
T  432109 tgagatcgacatcacttcttcacccaaagtcctaaagcattagttatatggataatcttcctcatatgtttctcaacatatactcttgcatccaatgtcg 432010  T
Q  108 aattttaactcacgactgacacattaatatctctccattaagagactct 156  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  432009 aattttaactcacaattgacacattaatatctctccattaagagactct 431961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 20934967 - 20935083
Alignment:
Q  33 caaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacat 131  Q
    |||||||| ||||||||| |||||||  | ||||| || | |||||||||| |||||||| ||||||  ||| | ||||||||||||||  |||||||||    
T  20934967 caaagtccgaaagcattatgtatatgagtcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacctgacacat 20935065  T
Q  132 taatatctctccattaag 149  Q
    ||| ||||||||||||||    
T  20935066 taacatctctccattaag 20935083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 50331967 - 50332045
Alignment:
Q  71 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||||||||||||||||| ||||||  |||||   ||||||||||||   ||||||||||| ||||||| ||||||    
T  50331967 atatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctctattaag 50332045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 32970441 - 32970516
Alignment:
Q  46 cattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcac 120  Q
    |||||||||||||| | ||||| || |||| ||| ||| |||||||||||||||||||||| ||| ||| ||||||    
T  32970441 cattaggtatatgggtcatctcacttatatatttttcagcatctactcttgcatctaatgtgaaactttcactcac 32970516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 17764237 - 17764121
Alignment:
Q  33 caaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacat 131  Q
    ||||||| |||||||||| |||||||  ||||||| || ||||||| |||| ||| |||||| || |  |||||  |||||||||||||   || |||||    
T  17764237 caaagtcttaaagcattatgtatatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacat 17764139  T
Q  132 taatatctctccattaag 149  Q
    ||| ||||||||||||||    
T  17764138 taacatctctccattaag 17764121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 19065557 - 19065441
Alignment:
Q  33 caaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacat 131  Q
    ||||||| |||||||||| |||||||  ||||||| || ||||||| |||| ||| |||||| || |  |||||  |||||||||||||   || |||||    
T  19065557 caaagtcttaaagcattatgtatatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacat 19065459  T
Q  132 taatatctctccattaag 149  Q
    ||| ||||||||||||||    
T  19065458 taacatctctccattaag 19065441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 42400405 - 42400469
Alignment:
Q  85 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||||||||||    
T  42400405 atctactattgcatacaatataaaattttaactcacacgtgacacattaacatctctccattaag 42400469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 42757527 - 42757701
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctcc-tcatatgtttctcaacatctactcttgcatct--aatgt 105  Q
    |||||| |||||||| | |||||||||||||||||  ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |  |||||    
T  42757527 tgagatcgacatcaccttttcacccaaagtcctaagacattaggtatatg-ataatctccctcatatgtttttcaacatctactcttgcatatccaatgt 42757625  T
Q  106 caaattttaactcacgactgacacattaatatctctccattaagagactcttcgtgtctgtgatccatcaccaaga 181  Q
     ||| ||| |||||| | ||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  42757626 taaacttttactcacaattgacacattaacatctctctattaagagactctccgtgtctgtgatccaccaccaaga 42757701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 13228770 - 13228658
Alignment:
Q  71 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaa----gagactcttcgtgtctgt 166  Q
    ||||||||||||||||||||| ||||||  |||||   ||||||||||||   ||||||||||| |||||||||||||    |||||| || |||||||     
T  13228770 atatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagtatgagactttttgtgtctgc 13228671  T
Q  167 gatccatcaccaa 179  Q
    |||||| ||||||    
T  13228670 gatccaccaccaa 13228658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 50158266 - 50158188
Alignment:
Q  71 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||| |||||||| |||||||||||  ||||| ||| |||||||||    ||||||||||| ||||||||||||||    
T  50158266 atatgttgctcaacatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctctccattaag 50158188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 35308209 - 35308158
Alignment:
Q  130 attaatatctctccattaag----agactcttcgtgtctgtgatccatcacc 177  Q
    ||||||||||||||||||||    ||||||||||||||||||||||| ||||    
T  35308209 attaatatctctccattaagtgtcagactcttcgtgtctgtgatccaccacc 35308158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 24183445 - 24183510
Alignment:
Q  83 acatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaa 148  Q
    ||||||||||||||||  ||||| ||||||||||| ||   | ||||||||| |||||||||||||    
T  24183445 acatctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaa 24183510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 39976730 - 39976693
Alignment:
Q  78 tctcaacatctactcttgcatctaatgtcaaattttaa 115  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  39976730 tctcaacatctactcttgcatctaatgtgaaaatttaa 39976693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 28475656 - 28475720
Alignment:
Q  85 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||||||||||  ||||| ||||||||||| ||   | ||||||||| ||||||||||||||    
T  28475656 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaag 28475720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 6466287 - 6466121
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtca 107  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||| |||||| ||||||| |||||||||||| |||||||    
T  6466287 tgagatcgacatcacttcttcacccaaaatcctaaagcattgggtatatgaataatctctctcaaatgtttttcaacatttactcttgcatccaatgtca 6466188  T
Q  108 aattttaactcacgactgacacattaatatctctccattaagagactcttcgtgtctgtgatccatcacca 178  Q
    |||||||| ||||     |||| |||| || ||||||||||||||||||  |||||||||||||| |||||    
T  6466187 aattttaattcac----aacacgttaacatttctccattaagagactctctgtgtctgtgatccaccacca 6466121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 3395400 - 3395573
Alignment:
Q  11 agatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaa 109  Q
    |||| ||||||||  ||||||||||| || |||  |||||| ||||||  | ||||| || ||||||||||||||||||||| ||||||  || ||   |    
T  3395400 agattgacatcacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgtta 3395499  T
Q  110 ttttaactcacgactgacacattaatatctctccattaa----gagactcttcgtgtctgtgatccatcaccaa 179  Q
    |||||||||||  |||||||||||| |||||||||||||    ||||||||| ||||||| |||||| ||||||    
T  3395500 ttttaactcacacctgacacattaacatctctccattaagtatgagactctttgtgtctgcgatccaccaccaa 3395573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 36727642 - 36727705
Alignment:
Q  71 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaa 134  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||| |||| | |||||||||||    
T  36727642 atatgtttcttaacatctacttttgcatctaatgtgaaattttaagtcacaattgacacattaa 36727705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 36720205 - 36720068
Alignment:
Q  11 agatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaa 109  Q
    |||| |||||||| ||||||||||||||| | |  |||||||||||||||| ||||| || ||||||| |||||||| || | |||||   | |||  ||    
T  36720205 agattgacatcacatcttcacccaaagtcttcagacattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaa 36720106  T
Q  110 ttttaactcacgactgacacattaatatctctccatta 147  Q
    |||||||||||   ||||||||||| |||||| |||||    
T  36720105 ttttaactcacacttgacacattaacatctcttcatta 36720068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 30637861 - 30637908
Alignment:
Q  108 aattttaactcacgactgacacattaatatctctccattaagagactc 155  Q
    ||||||||||||| | ||||||||||||||  ||||||||||||||||    
T  30637861 aattttaactcacaattgacacattaatataactccattaagagactc 30637908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 19040761 - 19040697
Alignment:
Q  85 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||||||||||    
T  19040761 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaag 19040697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 652 - 489
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatct-cctcatatgtttctcaacatctactcttgc--atctaatgt 105  Q
    |||||| |||||||||| |||||||||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||||||||||  ||| |||||    
T  652 tgagatcgacatcactttttcacccaaagtcctaagacattaggtatat-gataatctccctcatatgtttctcaacatctactcttgcatatccaatgt 554  T
Q  106 caaattttaactcacgactgacacattaatatctctccattaagagactcttcgtgtctgtgatc 170  Q
      || ||| ||| || ||||||||||||| ||||||| ||||||||||||| ||||||| |||||    
T  553 tgaacttttacttacaactgacacattaacatctctctattaagagactctccgtgtctatgatc 489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 1419 - 1582
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatct-cctcatatgtttctcaacatctactcttgc--atctaatgt 105  Q
    |||||| |||||||||| |||||||||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||||||||||  ||| |||||    
T  1419 tgagatcgacatcactttttcacccaaagtcctaagacattaggtatat-gataatctccctcatatgtttctcaacatctactcttgcatatccaatgt 1517  T
Q  106 caaattttaactcacgactgacacattaatatctctccattaagagactcttcgtgtctgtgatc 170  Q
      || ||| ||| || ||||||||||||| ||||||| ||||||||||||| ||||||| |||||    
T  1518 tgaacttttacttacaactgacacattaacatctctctattaagagactctccgtgtctatgatc 1582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 18953297 - 18953464
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctcc-tcatatgtttctcaacatctactcttgcatctaatgtca 107  Q
    |||||| || |||||||||||||||||||||||||||||||| || | || ||||||||| ||| |||||| |||||||||||||||||||| |||||||    
T  18953297 tgagatcgatatcacttcttcacccaaagtcctaaagcattaagtttttgaataatctccctcaaatgtttttcaacatctactcttgcatccaatgtca 18953396  T
Q  108 aattttaactcacgactgacacattaata---tctctccattaagagactcttcgtgtctgtgatcca 172  Q
    |||||||| ||||   ||||||||||| |   | |||||||||| ||| ||| |||||||||||||||    
T  18953397 aattttaattcacagttgacacattaacaacctttctccattaatagaatctccgtgtctgtgatcca 18953464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 10901452 - 10901529
Alignment:
Q  72 tatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    |||||| ||||||||||||| ||||||  |||||   ||||||||||||   ||| ||||||| ||||||||||||||    
T  10901452 tatgttactcaacatctactattgcattcaatgtgttattttaactcacatttgatacattaacatctctccattaag 10901529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 21587045 - 21587082
Alignment:
Q  78 tctcaacatctactcttgcatctaatgtcaaattttaa 115  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  21587045 tctcaacatctactcttgcatctaatgtgaaaatttaa 21587082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 9012660 - 9012801
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtca 107  Q
    |||||| || ||||| || ||| |||||||||||| |||||| ||||| || | | ||| || ||||||| ||||||||||||||||| ||  | ||| |    
T  9012660 tgagattgatatcacatcgtcatccaaagtcctaaggcattatgtataagggtcagctcacttatatgttgctcaacatctactcttgaattcattgtga 9012759  T
Q  108 aattttaactcacgactgacacattaatatctctccattaag 149  Q
    |||||||||| ||   |||||||||||||| |||||||||||    
T  9012760 aattttaactaacacttgacacattaatatgtctccattaag 9012801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 38015878 - 38016015
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtca 107  Q
    |||||| ||||||||  ||||||||||| || |||  |||||| ||||||  | ||||| || ||||||| ||||||||||||| ||||||  |||||      
T  38015878 tgagattgacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgt 38015977  T
Q  108 aattttaactcacgactgacacattaatatctctccat 145  Q
     ||||||||||||   ||||||||||| ||||||||||    
T  38015978 tattttaactcacacttgacacattaacatctctccat 38016015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 24539721 - 24539672
Alignment:
Q  9 tgagatggacatcacttcttcacccaaagtcctaaagcattaggtatatg 58  Q
    |||||| |||| ||| ||||||||||||||| ||||| ||||||||||||    
T  24539721 tgagattgacaacacatcttcacccaaagtcttaaagtattaggtatatg 24539672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 31737233 - 31737287
Alignment:
Q  80 tcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaa 134  Q
    |||||||||||||||||||| ||||| |||||||||||||| | |||||||||||    
T  31737233 tcaacatctactcttgcatccaatgtgaaattttaactcacaattgacacattaa 31737287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 1599760 - 1599682
Alignment:
Q  71 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||||||||||||||||| ||||||  |||||   ||||||||||||   ||||||||||| ||||||| ||||||    
T  1599760 atatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctctattaag 1599682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 7428507 - 7428571
Alignment:
Q  85 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||||||||||    
T  7428507 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaag 7428571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 43387108 - 43387213
Alignment:
Q  71 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaa----gagactcttcgtgtctgt 166  Q
    ||||||||||||||||||||| ||||||  |||||  |||||||||||||   ||||||||||| |||||||  ||||    |||||||| ||||||||     
T  43387108 atatgtttctcaacatctactattgcattcaatgtgtaattttaactcacacttgacacattaacatctctctgttaagtacgagactctccgtgtctgc 43387207  T
Q  167 gatcca 172  Q
    ||||||    
T  43387208 gatcca 43387213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 22636335 - 22636405
Alignment:
Q  79 ctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||||||||||||||||  || |||||||||||||||||   ||| | ||||| ||||||||||||||    
T  22636335 ctcaacatctactcttgcattcaaagtcaaattttaactcacacttgaaaaattaacatctctccattaag 22636405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 20306703 - 20306819
Alignment:
Q  33 caaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacat 131  Q
    |||||||  ||||||||| |||||||  | ||||| || | ||||||||||  ||||||| ||||||  ||| | ||||||||||||||   ||||||||    
T  20306703 caaagtctgaaagcattatgtatatgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacat 20306801  T
Q  132 taatatctctccattaag 149  Q
    ||| ||||||||||||||    
T  20306802 taacatctctccattaag 20306819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 16852024 - 16851931
Alignment:
Q  87 ctactcttgcatctaatgtcaaattttaactcacgactga-cacattaatatctctccattaa---gagactcttcgtgtctgtgatccatcacc 177  Q
    ||||||||||||  ||||| ||||||||||| || ||||| |||||||| |||||||||||||    |||||||||||||  |||||||| ||||    
T  16852024 ctactcttgcatacaatgtgaaattttaacttac-actgaacacattaacatctctccattaaagtcagactcttcgtgttcgtgatccaccacc 16851931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 40946583 - 40946519
Alignment:
Q  85 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    ||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||||||||||    
T  40946583 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaag 40946519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 19092 - 19051
Alignment:
Q  76 tttctcaacatctactcttgcatctaatgtcaaattttaact 117  Q
    ||||||| |||||||||| ||||||||||||||| |||||||    
T  19092 tttctcaccatctactctagcatctaatgtcaaaatttaact 19051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 295 - 370
Alignment:
Q  73 atgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    |||||||||| |||||||| ||||||  ||| | ||||||||||||||   || |||||||| ||||||||||||||    
T  295 atgtttctca-catctactattgcatacaatataaaattttaactcacacttgccacattaacatctctccattaag 370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 1923 - 1848
Alignment:
Q  73 atgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 149  Q
    |||||||||| |||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||| ||||||    
T  1923 atgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaag 1848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University