View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7231_high_2 (Length: 559)
Name: NF7231_high_2
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_high_2 |
 | |
|
| [»] scaffold0246 (2 HSPs) |
| | |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0246 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 301 - 546
Target Start/End: Original strand, 711 - 956
Alignment:
| Q |
301 |
ggctcagttggtggttacatgagcttgcttgtagtaatatatttttccatcttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
711 |
ggctcagttggtggttacatgagcttgcttgtggtaatatatttttccatcttttttaagttaaacttaaatgtatagtttcttgtatgacacccgtgta |
810 |
T |
|
| Q |
401 |
ctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataac |
500 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
811 |
ctgatatagatttgtcactttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataac |
910 |
T |
|
| Q |
501 |
ccgtatgtgggtagatggagaccacaaagggggtttaaacatgatg |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
911 |
ccgtatgtgggtagatggagaccacaaagggggtttaaacatgatg |
956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 496 - 534
Alignment:
| Q |
262 |
agcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
496 |
agcaggagctgagtcgtcttaggcccgcctgtgtcaagg |
534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 40452767 - 40453023
Alignment:
| Q |
11 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttcta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40452767 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgatggacggctcattcaggaggaggatttaaatcatgaccatgatgtagatcttctg |
40452866 |
T |
|
| Q |
111 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40452867 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttggtgcctctgtcactttcacggccctgaaagaccgttatgagtacc |
40452966 |
T |
|
| Q |
211 |
tgttgaacaggtgtaaccagttgctgggggagaatttatcagaggaggaggagcagg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40452967 |
tgttgaacaggtgtaaccagttgctgggggaggatttatcagaggaggaggagcagg |
40453023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 301 - 543
Target Start/End: Complemental strand, 629583 - 629340
Alignment:
| Q |
301 |
ggctcagttggtggttacatgagcttgcttgtagtaatatatttttccatctt-ttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgt |
399 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
629583 |
ggctcagttggtggtcacatgagctttcttgtggtaatatatttttccttcttcttttaagttaaacgtaaatgtatagtttcttgtatgacacacgtgt |
629484 |
T |
|
| Q |
400 |
gctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataa |
499 |
Q |
| |
|
||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
629483 |
gctaataaagatttgtctctttgtttttgcagggatgggttatagctcactttagacatgtggttccgaggaagaaatttgaagagtatgaacggcataa |
629384 |
T |
|
| Q |
500 |
cccgtatgtgggtagatggagaccacaaagggggtttaaacatg |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
629383 |
cccgtatgtgggtagatggagaccacaaagggggtttaaacatg |
629340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 632928 - 632639
Alignment:
| Q |
11 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttcta |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||||| ||| |||||||| ||||||||| || |
|
|
| T |
632928 |
catcacactggatgatgtggcttgtctcctagacatccccctcgctagacatctcattcatgaggaggatttagatcttgaccatgttgtagatctactg |
632829 |
T |
|
| Q |
111 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
210 |
Q |
| |
|
|| ||||||| |||||| ||||||||||| | || ||||||||||||||||| | ||| |||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
632828 |
gtcactcaccaattgttttcggtggaggatacagtcatgcaggtgactgattttggttcctttgtcactttcacggccctaaaagaccgttatgagtaca |
632729 |
T |
|
| Q |
211 |
tgttgaacaggtgtaaccagttgctgggggagaatttatcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
632728 |
tgttgaacaggtgtaaccagttgctgggggaggatttatcagaggaggaggagcaggagatgagttgtattaggcccgcttgtgtcaagg |
632639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 353 - 536
Target Start/End: Original strand, 38651472 - 38651655
Alignment:
| Q |
353 |
tttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttc |
452 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||| || ||||| ||||||| |||||||||||||| ||||||| |||| ||| | ||||||||| |
|
|
| T |
38651472 |
tttttaagttaattgtaaatgtatagttttttgaatgatacttgtgtgttgatataaatttgtctctttgtgtttgcagggatgagtttttgctcacttc |
38651571 |
T |
|
| Q |
453 |
agacatgtggttccgaggaagaaatttgaagagtatgaacggcataacccgtatgtgggtagatggagaccacaaagggggttt |
536 |
Q |
| |
|
|||||| | |||||||||| || || |||||| || || ||| ||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
38651572 |
agacatctcgttccgaggaggagatatgaagattacgatcggacggacccgtatgtgggtagatggaaacctcccagggggttt |
38651655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 9386030 - 9386319
Alignment:
| Q |
11 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttcta |
110 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
9386030 |
catcacactggatgatgttacttgtctcctagacatccccgtcgctggacggctcattcaagaggaggatttagatcatgaccatgttgtagatctgctg |
9386129 |
T |
|
| Q |
111 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
210 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
9386130 |
gtgactcaccttttctttccggtggaggatgcggttgagcaagtgactgattttggtgcctctgtcactttcacggccctaaaagaccgttatgagtaca |
9386229 |
T |
|
| Q |
211 |
tgttgaacaggtgtaaccagttgctgggggagaatttatcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
9386230 |
tgttgaacaggtgtaatcagttgttgggggaggatttatcagaggagaatgagcaggagctgagtcgtattaggctcgcttgtgtcaagg |
9386319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 301 - 542
Target Start/End: Original strand, 9386496 - 9386738
Alignment:
| Q |
301 |
ggctcagttggtggttacatgagcttgcttgtagtaatatatttttccatctttt-ttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9386496 |
ggctcagttggtggttacatgagcttgcttgcggtaatatatttttccttctttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgt |
9386595 |
T |
|
| Q |
400 |
gctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
9386596 |
gctgatatagatttgtctctttgtttttgcagggatgggttataactcacttcagacatgtggttctaaggaagaaatttgaagagtatgaacggcttaa |
9386695 |
T |
|
| Q |
500 |
cccgtatgtgggtagatggagaccacaaagggggtttaaacat |
542 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9386696 |
cctgtatgtgggtagatggagaccacaaagggggtttaaacat |
9386738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 307 - 516
Target Start/End: Complemental strand, 15910242 - 15910031
Alignment:
| Q |
307 |
gttggtggttacatgagcttgcttgtagtaatatatttttccatc--ttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctga |
404 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||| | |||||||||| || |||||||||||||||| |||||||| || ||||||| | |
|
|
| T |
15910242 |
gttggtggttacatgagcttgcttattgtaatatatttttttcttatttttttaagtgaatcgtaaatgtatagttttttgtatgatacttgtgtgctaa |
15910143 |
T |
|
| Q |
405 |
tatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataacccgt |
504 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| ||| | ||||||||||||| | || |||||| |||||||||||| || || ||| | |||||| |
|
|
| T |
15910142 |
tataaatttgtctctttgtgtttgcaggaatgagttttttctcacttcagacaactcatttcgaggaggaaatttgaagattacgatcgggaggacccgt |
15910043 |
T |
|
| Q |
505 |
atgtgggtagat |
516 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15910042 |
atgtgggtagat |
15910031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 440
Target Start/End: Original strand, 2640668 - 2640800
Alignment:
| Q |
307 |
gttggtggttacatgagcttgcttgtagtaat-atatttttccatcttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgat |
405 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | | ||||| |||||| ||| || |||||||||||||| |||||||| | | | || |||| |
|
|
| T |
2640668 |
gttggtggttacatgagcttgcttgtggtaataaaaattttcttattttttttagtgaattgtaaatgtatagttgtttgtatgata--cttatgatgat |
2640765 |
T |
|
| Q |
406 |
atagatttgtctctttgtttttgcagagatgggtt |
440 |
Q |
| |
|
||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
2640766 |
ataaatttgtctctttgtgtttgcagggatgggtt |
2640800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 941359 - 941648
Alignment:
| Q |
11 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttcta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||| || |
|
|
| T |
941359 |
catcacactggatgatgttgcttgtctcctagacatccccgtcgctggacggatcattcaggaggaggatttagatcataaccatgttgtagatctgctg |
941458 |
T |
|
| Q |
111 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
210 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||| |
|
|
| T |
941459 |
gtgactcaccttttgttttcgatggaggatgcggttgagcagtagactgattttggtgcctctctcactttcacggccttgaaagaccgttatgagtacc |
941558 |
T |
|
| Q |
211 |
tgttgaacaggtgtaaccagttgctgggggagaatttatcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
941559 |
tgttgaatagttgtaaccagttgttgggggagtatttatcagaggaggaggagcaggaggtgagtcgtattaggcccgcctgtgtcaagg |
941648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 302 - 543
Target Start/End: Original strand, 941825 - 942067
Alignment:
| Q |
302 |
gctcagttggtggttacatgagcttgcttgtagtaatatatttttccatctttt-ttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
941825 |
gctcagttggtggttacatgagcttgcttgtggtaatatatttttccttctttttttaagttaaacgtaaatgtataatttctttaatgacacccgtgtg |
941924 |
T |
|
| Q |
401 |
ctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
941925 |
ctgatatagatttgtctctttgtttttgtagggatgggttataactcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacgacataac |
942024 |
T |
|
| Q |
501 |
ccgtatgtgggtagatggagaccacaaagggggtttaaacatg |
543 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
942025 |
ccgtatgtgggtagatggagaccacaaatggggtttaaacatg |
942067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 308 - 532
Target Start/End: Original strand, 40260519 - 40260740
Alignment:
| Q |
308 |
ttggtggttacatgagcttgcttgtagtaatatatttttccatcttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgatat |
407 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| | | || ||| || |||| |||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
40260519 |
ttggtggttacatgaccttgcttgtggtaatatatatatatat---tttaaaattaatcgtaaatgtatagttttttgtatgatacttgtgtgctgatat |
40260615 |
T |
|
| Q |
408 |
agatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataacccgtatg |
507 |
Q |
| |
|
| |||||||||||||| |||||| |||| |||||| |||||||||||||||| |||||||||||||||| |||||| || |||||| | |||||||||| |
|
|
| T |
40260616 |
aaatttgtctctttgtgtttgcaaggatgagttataactcacttcagacatgtcgttccgaggaagaaatatgaagattacgaacgggagaacccgtatg |
40260715 |
T |
|
| Q |
508 |
tgggtagatggagaccacaaagggg |
532 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
40260716 |
agggtagatggagacctaaaagggg |
40260740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 454
Target Start/End: Complemental strand, 11806211 - 11806065
Alignment:
| Q |
307 |
gttggtggttacatgagcttgcttgtagtaatatatttttc-catcttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgat |
405 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| |||||| | | |||||| ||| || ||||||||||||||| | |||||| || | ||||||| |
|
|
| T |
11806211 |
gttggtggttacataaccttgcttgtgataatacatttttttcttatttttttagtgaatcgtaaatgtatagttgttcgtatgatact--tatgctgat |
11806114 |
T |
|
| Q |
406 |
atagatttgtctctttgtttttgcagagatgggttatagctcacttcag |
454 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||| | || |||||||| |
|
|
| T |
11806113 |
ataaatttgtctctttgtgtttgcagagatgggtttttgcgcacttcag |
11806065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 301 - 543
Target Start/End: Original strand, 25401365 - 25401608
Alignment:
| Q |
301 |
ggctcagttggtggttacatgagcttgcttgtagtaatatatttttccatctttt-ttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgt |
399 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25401365 |
ggctcagttggtggttatatgagcttgcttgtggtaatatatttttccttctttttttaagttaaacgtaaatgtatagtttcttgtatgacactcgtgt |
25401464 |
T |
|
| Q |
400 |
gctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
25401465 |
gctgatatagatttgtctctttgtttttgcagggatgggttatagctcacttcatacatgtggttccgaggaagaaatttgacgagtatgaacaacataa |
25401564 |
T |
|
| Q |
500 |
cccgtatgtgggtagatggagaccacaaagggggtttaaacatg |
543 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25401565 |
cccgtatgtgggtaaatggagaccacaaagggggtttaaacatg |
25401608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 310 - 523
Target Start/End: Original strand, 2029410 - 2029621
Alignment:
| Q |
310 |
ggtggttacatgagcttgcttgtagtaatatatttttccatctt-ttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgatata |
408 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||| | | || ||||||||||| | |||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
2029410 |
ggtggttacatgagcttgcttgtggtatt---ttttttcttattcttttaagttaatcataaatgtatagttttttgtatgatacttgtgtgctgatata |
2029506 |
T |
|
| Q |
409 |
gatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataacccgtatgt |
508 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||||||||||||||| | |||||||||| ||||| |||||| || |||||| | ||||||||||| |
|
|
| T |
2029507 |
aatttgtctctttgtgtttgcagggatgggttttagctcacttcagacatatcgttccgaggaggaaatatgaagattacgaacgggagaacccgtatgt |
2029606 |
T |
|
| Q |
509 |
gggtagatggagacc |
523 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2029607 |
gggtagatggagacc |
2029621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 25400994 - 25401096
Alignment:
| Q |
63 |
ctcattcaggaggaggatttaaatcatgaccatggtgtagatcttctagtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgatt |
162 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25400994 |
ctcattcaggaggaggatttagatcatgaccatgttttagatctgctgctgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgatt |
25401093 |
T |
|
| Q |
163 |
ttg |
165 |
Q |
| |
|
||| |
|
|
| T |
25401094 |
ttg |
25401096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 2028934 - 2029224
Alignment:
| Q |
13 |
tcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttctagt |
112 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||| ||| |||||| || ||| ||||||| || ||| ||||| | || ||||| || | | |
|
|
| T |
2028934 |
tcacactagatgatgtggcttgtcttctagacatccccatcgttggacggcttattgaggaggatgacttagatcattgcgtgggcgtagagctgttgga |
2029033 |
T |
|
| Q |
113 |
gactcaccttttgtttccggtggaggatgcggttgagcaggtgactgat---tttgatgcctctgtcactttcacggccctgaaagactgttatgagtac |
209 |
Q |
| |
|
|| ||| || ||||| |||||||||||||| | |||||||||| | || | || ||| | |||||||| ||| ||| ||||||| |||| ||| | |
|
|
| T |
2029034 |
gaatcagctactgtttacggtggaggatgcgatggagcaggtgagttataattctggtgcttatgtcacttacacagccttgaaagagcgttacgagcag |
2029133 |
T |
|
| Q |
210 |
ctgttgaacaggtgtaaccagttgctgggggagaatttatcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||| ||| |||||||||| ||||| |||| |
|
|
| T |
2029134 |
ctgttgaataggtgtaaccagttggtgggggaggatttatcagaggaggaggaggaggagcagaggcgtgttaggcccgcctgtgttaagg |
2029224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 25401097 - 25401188
Alignment:
| Q |
206 |
gtacctgttgaacaggtgtaaccagttgctgggggagaatttatcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25401097 |
gtacctgttgaacatgtgtaactagttgctgggggaggatttatca---gaggaggagtaggagctgagtcgtattaggcccgcctgtgtcaagg |
25401188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 301 - 543
Target Start/End: Complemental strand, 49031717 - 49031474
Alignment:
| Q |
301 |
ggctcagttggtggttacatgagcttgcttgtagtaatatatttttccatctttttt-aagttaaacgtaaatgtatagtttcttgtatgacacccgtgt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49031717 |
ggctcagttggtggttacatgagcttgcttgcggtaatatatttttccttctttttttaagttaaacgtaaatgtatagtttcttgtatgacacctgtgt |
49031618 |
T |
|
| Q |
400 |
gctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
49031617 |
gctgatatagatttgtctctttgtttttgcagggatgggttataggtcacttcagacatgtggtgtcgatgaagaaatttgaagagtatgaacggcataa |
49031518 |
T |
|
| Q |
500 |
cccgtatgtgggtagatggagaccacaaagggggtttaaacatg |
543 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49031517 |
cccatatgtgggtagatggagaccacaaagggggtttaaacatg |
49031474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 28444736 - 28445027
Alignment:
| Q |
11 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttcta |
110 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||||||| |||||| |||||||||| |||||||||||| ||||||| |||| ||||||||| | |
|
|
| T |
28444736 |
catcacactg-atgatgtggcttgtctcctagacatccccgtagctggaagactcattcacgaggaggatttagatcatgatcatgttgtagatctgttg |
28444834 |
T |
|
| Q |
111 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
210 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||| |||||||| |||||||| |||||||||||||||||| |||||||| ||| ||||||| ||| |
|
|
| T |
28444835 |
gtgactcacctattgtttccggcggaggacgcggttgggcaggtgagtgattttggtgcctctgtcactttcacagccctgaaggaccgttatgaccacc |
28444934 |
T |
|
| Q |
211 |
tgttgaacaggtgtaaccagttgctgggggagaatttatcagagg---aggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
28444935 |
tgttgaacaggtgtaaccatttgttgggggaggatttatcagaggagaaggtggagcaagagctgagtcgtattaggcccgcctgtgtcaagg |
28445027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 301 - 543
Target Start/End: Original strand, 28445204 - 28445447
Alignment:
| Q |
301 |
ggctcagttggtggttacatgagcttgcttgtagtaatatatttttccatctttt-ttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgt |
399 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
28445204 |
ggctcagttggtggttacatgagcttggttgtggtaatatattttttcttctttttttaagttaaacgtaaatatatagtttcttgtatgacactcatgt |
28445303 |
T |
|
| Q |
400 |
gctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| || |||| |||| || || | |||| || |||| | | || |
|
|
| T |
28445304 |
gctgatatagatttgtctctttgtttttgcagggatgggttataactcacttcagacaagtcgttctgaggtcgagatatcaagattacgaacagaagaa |
28445403 |
T |
|
| Q |
500 |
cccgtatgtgggtagatggagaccacaaagggggtttaaacatg |
543 |
Q |
| |
|
| ||||| |||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
28445404 |
ctcgtatatgggtagatgaagacctcaaatggggtttaaacatg |
28445447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 308 - 510
Target Start/End: Original strand, 48956376 - 48956570
Alignment:
| Q |
308 |
ttggtggttacatgagcttgcttgtagtaatatatttttccatcttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgatat |
407 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||| ||| |||||||| || |||||||||| | |
|
|
| T |
48956376 |
ttggtggttacatgaccttgcttgtggtaatatattttt--------tttaagttaatcgtaaatgtatatttttttgtatgatacttgtgtgctgattt |
48956467 |
T |
|
| Q |
408 |
agatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataacccgtatg |
507 |
Q |
| |
|
| |||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| || |||||| | ||||||||| |
|
|
| T |
48956468 |
aaatttgtctatttgtgcttgcaaggatgggttatagctcacttcagacatgtcattccgaggaagaaatatgaagattacgaacgggagtacccgtatg |
48956567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 48956088 - 48956192
Alignment:
| Q |
199 |
gttatgagtacctgttgaacaggtgtaaccagttgctgggggagaatttatca---gaggaggaggagcaggagctgagtcgtattaggcccgcatgtgt |
295 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| | ||| |
|
|
| T |
48956088 |
gttatgaggagctgttgaataggtgtaaccatttgctgggggaggatttatcagatgaggaggaggaggaggagctgagtcgtattaggcccgcctatgt |
48956187 |
T |
|
| Q |
296 |
caagg |
300 |
Q |
| |
|
||||| |
|
|
| T |
48956188 |
caagg |
48956192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 405
Target Start/End: Complemental strand, 21737019 - 21736919
Alignment:
| Q |
308 |
ttggtggttacatgagcttgcttgtagtaatatatt--tttcc-atcttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctga |
404 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||| |||| || ||||||||||||| |||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
21737019 |
ttggtggttacaagaccttgcttgtggtaatatattattttcttattttttttaagttaatcgtaaatgtatagttttttgtatgatacttgtgtgctga |
21736920 |
T |
|
| Q |
405 |
t |
405 |
Q |
| |
|
| |
|
|
| T |
21736919 |
t |
21736919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 49031945 - 49031894
Alignment:
| Q |
249 |
tcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | |||||||||| |
|
|
| T |
49031945 |
tcagaggaggaggagcagaagctgagtcgtattaggcacacctgtgtcaagg |
49031894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 39687141 - 39686851
Alignment:
| Q |
11 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttcta |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| || |||||| | |||||||| |||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
39687141 |
catcacactggatgatgtggcttgtctcctagacatccctgttgctggaaggctcattcacgaggaggatttagatcatgaccatgttgtagatctgctg |
39687042 |
T |
|
| Q |
111 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
210 |
Q |
| |
|
|| |||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39687041 |
gtcactcacctattgtttccggtggaggatacggttgggcaggtgactgattttggtgcctctgtcactttcacggccctgaaagaccgttatgagtacc |
39686942 |
T |
|
| Q |
211 |
tgttgaaca-ggtgtaaccagttgctgggggagaatttatcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
39686941 |
tgttgaagatggtgtaaccatttgctgggggaggatttatcagaggaggaggagcaggagttgagtcgtattaggcccgcctttgtcaagg |
39686851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 301 - 543
Target Start/End: Complemental strand, 39686674 - 39686433
Alignment:
| Q |
301 |
ggctcagttggtggttacatgagcttgcttgtagtaatatatttttccatcttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtg |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39686674 |
ggctcagttggtggttacatgagtttgcttatggtaatatagtttttttt-tttttaaagttaaacgtaaatgtatagtttcttgtatgacactcgtgtg |
39686576 |
T |
|
| Q |
401 |
ctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataac |
500 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||| |||||| || || | |||| || |||||| ||||| |
|
|
| T |
39686575 |
ctgatatagatttgtctccttgtttttacagggatgggttatagctcacttaagacatgtggtgccgaggtcgagatatcaagattacgaacgggataac |
39686476 |
T |
|
| Q |
501 |
ccgtatgtgggtagatggagaccacaaagggggtttaaacatg |
543 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
39686475 |
ccgtttgtgggtagatggagacctcaaatggggtttagacatg |
39686433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 21565160 - 21565452
Alignment:
| Q |
11 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttcta |
110 |
Q |
| |
|
||||||||| |||||||| |||||||| ||| |||||| |||||||| | || ||||||||||| |||||| ||| | ||| ||||||| | || || |
|
|
| T |
21565160 |
catcacacttgatgatgtagcttgtcttctaggtatccccatcgctggaaggctgattcaggaggatgatttagatcctaaccttggtgtacagctgctg |
21565259 |
T |
|
| Q |
111 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgatttt---gatgcctctgtcactttcacggccctgaaagactgttatgagt |
207 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||| ||| |||||| | || | | |||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
21565260 |
gtgaatcactaattgtttccggtggaggaagcggtggagaaggtgagtaataattcaggtgcctctgtcacttacacggccctgaaagagcgttatgagc |
21565359 |
T |
|
| Q |
208 |
acctgttgaacaggtgtaaccagttgctgggggagaatttatcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
||||||| || || |||||||| || |||||||| || ||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
21565360 |
acctgttaaatagatgtaaccattttctgggggatgatctattagaggaggaggagcaggagctgagtcgtattaggcccgcctgtatcaagg |
21565452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 307 - 536
Target Start/End: Complemental strand, 11426231 - 11426001
Alignment:
| Q |
307 |
gttggtggttacatgagcttgcttgtagtaatatatttttccatcttttttaa-gttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgat |
405 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| | | |||||||| ||||| |||||||||||||| |||||||| | ||||||| || |
|
|
| T |
11426231 |
gttggtggttacatgaacttgcttgaggtaatatattttttcttattttttaaagttaattataaatgtatagttttttgtatgatatgtgtgtgctaat |
11426132 |
T |
|
| Q |
406 |
atagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttccgaggaagaaatttgaagagtatgaacggcataacccgta |
505 |
Q |
| |
|
||| |||||||||||||| ||||||| |||||||| ||||||||||||||||| | |||||||||| ||||| |||||| || || ||| |||| || |
|
|
| T |
11426131 |
ataaatttgtctctttgtgtttgcagggatgggttttagctcacttcagacatctcgttccgaggaggaaatatgaagattacgatcggggggacccata |
11426032 |
T |
|
| Q |
506 |
tgtgggtagatggagaccacaaagggggttt |
536 |
Q |
| |
|
|||||||||||||| ||| | ||||||||| |
|
|
| T |
11426031 |
tgtgggtagatggaaacctcctagggggttt |
11426001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 353 - 536
Target Start/End: Original strand, 21565689 - 21565872
Alignment:
| Q |
353 |
tttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttc |
452 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||||||| | |||| ||||||| || ||||| ||||| ||| ||| ||||||||||| ||||| || |
|
|
| T |
21565689 |
tttttaagttaatcgtaaatgtttagttttttgtatgatatttatgtgttgatataaatctgtctttttgtgttttcagggatgggttataactcacatc |
21565788 |
T |
|
| Q |
453 |
agacatgtggttccgaggaagaaatttgaagagtatgaacggcataacccgtatgtgggtagatggagaccacaaagggggttt |
536 |
Q |
| |
|
| |||||| |||||||||||||||| |||||| || |||||| | |||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
21565789 |
atacatgtagttccgaggaagaaatatgaagattacgaacgggcttacccgtatatgggtagatggaaacctaaaagggggttt |
21565872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 11426470 - 11426414
Alignment:
| Q |
244 |
atttatcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
|||||||| ||||||||||| | |||| ||||||| |||||||||| ||||| |||| |
|
|
| T |
11426470 |
atttatcaaaggaggaggaggaagagcagagtcgtgttaggcccgcctgtgttaagg |
11426414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 6e-91; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 6704206 - 6704495
Alignment:
| Q |
11 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttcta |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||| ||| |||||||||||| ||||||||||| |||||| || ||| |
|
|
| T |
6704206 |
catcacactggatgatgtggcttgtctcctagacatcctcgtcgctggacggctcactcacgaggaggatttagatcatgaccattctgtagaactgcta |
6704305 |
T |
|
| Q |
111 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
210 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||| ||| |||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
6704306 |
gtgactcacctattgtttccaatggaggacgcgattgggcaggtgagtgattttggtgcctctgtcactttcacggccctgaaggaccgttatgaccacc |
6704405 |
T |
|
| Q |
211 |
tgttgaacaggtgtaaccagttgctgggggagaatttatcagaggaggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
6704406 |
tgttgaacaagtgtaaccatttgttggaggagaatttatcagaggaggatgagcaggagctgcgtcgtattaggcccgcctgtgtcaagg |
6704495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 354 - 470
Target Start/End: Original strand, 6704758 - 6704873
Alignment:
| Q |
354 |
ttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttca |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6704758 |
ttttaagttaaacgtaaatgtatagtttct-gtatgacactcgtgttctgatatagatttgtctctttgtttttgcagggatgggttatagctcacttca |
6704856 |
T |
|
| Q |
454 |
gacatgtggttccgagg |
470 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6704857 |
gacatgtggttccgagg |
6704873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 6704913 - 6704958
Alignment:
| Q |
498 |
aacccgtatgtgggtagatggagaccacaaagggggtttaaacatg |
543 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
6704913 |
aacccgtatgtgggtagatggaaacctcaaagggggtttaaacatg |
6704958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 20943510 - 20943566
Alignment:
| Q |
397 |
tgtgctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttca |
453 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| |||||||||| || ||||||| |
|
|
| T |
20943510 |
tgtgctgatataaatttgtctctttgtgtttgcagggatgggttatggcgcacttca |
20943566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 6704667 - 6704708
Alignment:
| Q |
301 |
ggctcagttggtggttacatgagcttgcttgtagtaatatat |
342 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
6704667 |
ggctcaattggtggttacatgagcttggttgtggtaatatat |
6704708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 8523479 - 8523187
Alignment:
| Q |
11 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatggtgtagatcttcta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| | | |||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
8523479 |
catcacactggatgatgttgcttgtctccttggcatccccgtcgctggacggctcattcagaaggaggatttagatcatgaccatgttgtagatctcctg |
8523380 |
T |
|
| Q |
111 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||| ||| ||| ||||||||||| ||||| | ||| |
|
|
| T |
8523379 |
gtgactcaccttttgtttccagtggaggatgcggttgggcaagtgactgattttagtgcctctgtctcttacacacccctgaaagaccgttataaccacc |
8523280 |
T |
|
| Q |
211 |
tgttgaacaggtgtaaccagttgctgggggagaatttatcagagg---aggaggagcaggagctgagtcgtattaggcccgcatgtgtcaagg |
300 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||||||||||| |||||||| |||||||||||| ||||||||| || |||||||||| |
|
|
| T |
8523279 |
tgttgaacaggtgtaaccatttgttgggggaggatttatcagaggagaaggaggagtaggagctgagtcttattaggcctgcctgtgtcaagg |
8523187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 301 - 466
Target Start/End: Complemental strand, 8523010 - 8522844
Alignment:
| Q |
301 |
ggctcagttggtggttacatgagcttgcttgtagtaatatatttttccatctttttt-aagttaaacgtaaatgtatagtttcttgtatgacacccgtgt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
8523010 |
ggctcagttggtggttacatgagcttgcttgtggtaatatattttttcttctttttttaagttaaacgtaaatgtattgtttcttgtatgacacttgtgt |
8522911 |
T |
|
| Q |
400 |
gctgatatagatttgtctctttgtttttgcagagatgggttatagctcacttcagacatgtggttcc |
466 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8522910 |
gctgatataaatttgtctctttgtttttgcagggatgggttatagctcacttcagacatgtggttcc |
8522844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 352 - 543
Target Start/End: Complemental strand, 9631 - 9440
Alignment:
| Q |
352 |
ttttttaagttaaacgtaaatgtatagtttcttgtatgacacccgtgtgctgatatagatttgtctctttgtttttgcagagatgggttatagctcactt |
451 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||| ||||||| |||||||||||||| |||| |
|
|
| T |
9631 |
ttttttaaattaaacgtaaatgtatagtttcttgtatgacattcatgtgctgatatagatttatctccttgtgtttgcagggatgggttatagcttactt |
9532 |
T |
|
| Q |
452 |
cagacatgtggttccgaggaagaaatttgaagagtatgaacggcataacccgtatgtgggtagatggagaccacaaagggggtttaaacatg |
543 |
Q |
| |
|
|||||||||||||| ||| || || | |||| || |||||| | |||||||||||||||||||||| ||| || ||| |||||| ||||| |
|
|
| T |
9531 |
cagacatgtggttcgaaggtcgagatatcaagattacgaacgggagaacccgtatgtgggtagatggaaacctcagaggaggtttagacatg |
9440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University