View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7231_high_5 (Length: 333)
Name: NF7231_high_5
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_high_5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 12226469 - 12226136
Alignment:
| Q |
1 |
gcacagttaattattttactgtttaactgtttgttaaaatttactatttgattattttcattaacattgaaatctctcaataatttcacacaattagaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12226469 |
gcacagttaattattttactgtttaactgtatgttaaaatttactatttgattattttcattaacattgaaatctctcaataatttcacacaattagaga |
12226370 |
T |
|
| Q |
101 |
atttgcacaccagctcattgtgttaagtaaatttttggttagtttgttgttaaatgagtacagatt-acatagcttctactactatttagtctctcaagt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12226369 |
atttgcacaccagctcattgtgttaagtaaatttttggttagtttgttgttaaatgagtacagatttacatagcttctactactatttagtctctcaagt |
12226270 |
T |
|
| Q |
200 |
gcagttacttcacaacttcacccttgtgtatacatgaatgtcagatggtatcattttgacattatgaaaagaaaagaaacaaaacagttagagcttgtaa |
299 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12226269 |
gcagttacttcacaacttcacctttgtgtatacatgaatgtcagatggtatcattttgacattatgaaaagaaaagaaacaaaacagttagagcttgtaa |
12226170 |
T |
|
| Q |
300 |
acttctaagggccgacccaagcataaaacgactc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12226169 |
acttctaagggccgacccaagcataaaacgactc |
12226136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University