View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7231_high_7 (Length: 320)
Name: NF7231_high_7
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 2162211 - 2161914
Alignment:
| Q |
1 |
tggtgaattgaacgagactgtcgtgactgccttgatcatcatttttgttatatctattcagctatgtatagtccatcttgtgagctttcgccctagtaac |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2162211 |
tggtgaattgaatgagactgtcgtgactgccttgatcatcagttttgttatatctattcagctatgtatagtctatcttgcgagctttcgccctagtaac |
2162112 |
T |
|
| Q |
101 |
agcagcatctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagtgattcttgtttcgaagactgctactatcgttatttcga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2162111 |
agcagcatctttgggatcttattcatacttcttctatcaagtgcaatatcatttatagaagtgattcttgtttcgacgactgctactatcgttatttcga |
2162012 |
T |
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| Q |
201 |
tcacttggttttacgtannnnnnngggttttcatagtgcattgggaagtgatctattcggaagagattagattctcgcatggaatccagaaattgata |
298 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2162011 |
tcacttggttccacgtattttgttgggttttcatagtgcattgggaagtgatctattcggaagagattagattctcgcatggaatccagaaattgata |
2161914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 2164327 - 2164215
Alignment:
| Q |
98 |
aacagcagcatctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagtgattcttgtttcgaagactgctactatcgttattt |
197 |
Q |
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|||| ||||||||||||| ||||||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
2164327 |
aacaacagcatctttggggtcttattcataattctgctatcaactgcaatatcaattacagaagtgattcttgtttcgaagaccgctactatcgttattt |
2164228 |
T |
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| Q |
198 |
cgatcacttggtt |
210 |
Q |
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||||||||||||| |
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| T |
2164227 |
cgatcacttggtt |
2164215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 2181693 - 2181621
Alignment:
| Q |
103 |
cagcatctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagtgattcttgtttcg |
175 |
Q |
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||||||||||| ||| |||||||| |||| ||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
2181693 |
cagcatctttgatatcatattcataattctgctatcaactgcaatatcgtttatagaagtgagtcttgtttcg |
2181621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 1455911 - 1455856
Alignment:
| Q |
107 |
atctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagt |
162 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||| | |||||||| |
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| T |
1455911 |
atctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagt |
1455856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 1567434 - 1567489
Alignment:
| Q |
107 |
atctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagt |
162 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||| | |||||||| |
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| T |
1567434 |
atctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagt |
1567489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 2159572 - 2159516
Alignment:
| Q |
98 |
aacagcagcatctttgggatcttattcatacttctcctatcaactgcaatatcattt |
154 |
Q |
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||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||| |
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| T |
2159572 |
aacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcattt |
2159516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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