View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7231_low_10 (Length: 321)

Name: NF7231_low_10
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7231_low_10
NF7231_low_10
[»] chr2 (2 HSPs)
chr2 (13-303)||(5317539-5317829)
chr2 (13-196)||(5327898-5328072)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 5317539 - 5317829
Alignment:
Q  13 acatcaagttagataagaacaaatggacttcaagcttgacttatactgcagcattcttccctgtcagcatatttgcaatgatgcagttccctttatacgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5317539 acatcaagttagataagaacaaatggacttcaagcttgacttatactgcagcattcttccctgtcagcatatttgcaatgatgcagttccctttatacgt 5317638  T
Q  113 tgctatgaaaggatgtgtggtttcactccttaggagacttaagaagattgttcctcgtttcttcctcaatttgatcaaaaggagccagagggatagactc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5317639 tgctatgaaaggatgtgtggtttcactccttaggagacttaagaagattgttcctcgtttcttcctcaatttgatcaaaaggagccagagagatagactc 5317738  T
Q  213 tgggacatttaatatctaatttattttggttgtgcacatctggttaataacattttgctttttctaccattggacgtggaccttcataaaa 303  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5317739 tgggacatttaatatctaatttattttggttgtgtacatctggttaataacattttgctttttctaccattggacgtggaccttcataaaa 5317829  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 5328072 - 5327898
Alignment:
Q  13 acatcaagttagataagaacaaatggacttcaagcttgacttatactgcagcattcttccctgtcagcatatttgcaatgatgcagttccctttatacgt 112  Q
    |||||||||||||||||| |||||||| |||||      |||||| ||||||||| ||||| ||||| || |||||||||||||||||| ||||||| ||    
T  5328072 acatcaagttagataagagcaaatggagttcaa------cttatagtgcagcatttttccccgtcagtatttttgcaatgatgcagttcactttatatgt 5327979  T
Q  113 tgctatgaaaggatgtgtggtttcactccttaggagacttaagaagattgttcctcgtttcttcctcaatttgatcaaaaggag 196  Q
    ||| |||||||||||| |  |  ||||||||||||| |||||||||||||||||||||   || ||||| ||||||||||||||    
T  5327978 tgccatgaaaggatgtcttatggcactccttaggagccttaagaagattgttcctcgt---ttactcaagttgatcaaaaggag 5327898  T

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