View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7231_low_13 (Length: 294)
Name: NF7231_low_13
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 44443387 - 44443651
Alignment:
| Q |
8 |
tagcagagagggaaagtttgtcatagagatagtgtttatctcgaaaaatgtattgatttcatgcctcagaatttgttcacatggtcatgggagaaaataa |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44443387 |
tagcaaagagggaaagtttgtcatagagatagtgtttatttcgaaaaatgtattgatttcatccctcagaatttgttcacatggtcatgggagaaaataa |
44443486 |
T |
|
| Q |
108 |
tggaaattgtagcattccaactttcttcttatttcatattacattttatggattctttattgattagaaacccgaaacaaattgaaatgcttgatactgg |
207 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44443487 |
tggaaattgtagcattccaactttattcttatttcatattacattttatgggttctttgttgattttctacccgaaacaaattgaaatgcttgatactgg |
44443586 |
T |
|
| Q |
208 |
ttggtggtcacccacttactttggtaaaaagtggatgattcattcccttttatttattctccata |
272 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
44443587 |
ttggtggtcacccacttactttggtaataattggatgattcattcccttttatttattctccata |
44443651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University