View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7231_low_15 (Length: 292)
Name: NF7231_low_15
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 8627245 - 8627121
Alignment:
| Q |
16 |
acatcataattttttggaatgctgtctgcaatattttttgtagtgctacccttttgtttgtttgttcgttctagattattttaaatttcttttaaacaag |
115 |
Q |
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| T |
8627245 |
acatcataattttttggaatgctgtctgcaatattttttgtagtgctacccttttgtttgtttgttcgttctagattattttaaatttcttttaaacaag |
8627146 |
T |
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| Q |
116 |
tgatttagtaacttttctctggtaa |
140 |
Q |
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| T |
8627145 |
tgatttagtaacttttctctggtaa |
8627121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 8632500 - 8632395
Alignment:
| Q |
16 |
acatcataattttttggaatgctgtctgcaatattttttgtagtgctacccttttgtttgtttgttcgttctagattattttaaatttcttttaaacaag |
115 |
Q |
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| T |
8632500 |
acatcgtaattttttggaatgctagctgcaatgttttttgtagtgcttcccctttgtttgtctgttcgttcaagattttttttaatttattttaaacaag |
8632401 |
T |
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| Q |
116 |
tgattt |
121 |
Q |
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|||||| |
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| T |
8632400 |
tgattt |
8632395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 8627033 - 8626985
Alignment:
| Q |
226 |
gtattgctacctgtttgtttgccatgccatctaagattaatgttcgtta |
274 |
Q |
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| T |
8627033 |
gtattgctacctgtttgtttgccatgccatctaagattaatgttcgtta |
8626985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 8624627 - 8624586
Alignment:
| Q |
233 |
tacctgtttgtttgccatgccatctaagattaatgttcgtta |
274 |
Q |
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| T |
8624627 |
tacccgtttgtttgccatgccatctaagattaatgttcgtta |
8624586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 8632278 - 8632245
Alignment:
| Q |
241 |
tgtttgccatgccatctaagattaatgttcgtta |
274 |
Q |
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| T |
8632278 |
tgtttgccatgccatctaagattaacgttcgtta |
8632245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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