View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7231_low_17 (Length: 284)

Name: NF7231_low_17
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7231_low_17
NF7231_low_17
[»] chr6 (9 HSPs)
chr6 (1-271)||(785249-785530)
chr6 (43-130)||(1334687-1334774)
chr6 (43-132)||(26402624-26402713)
chr6 (52-136)||(32225330-32225414)
chr6 (61-136)||(26178527-26178602)
chr6 (43-78)||(6751880-6751915)
chr6 (101-136)||(19369889-19369924)
chr6 (87-138)||(34197186-34197237)
chr6 (43-76)||(19369843-19369876)
[»] chr2 (4 HSPs)
chr2 (43-138)||(43585943-43586038)
chr2 (86-138)||(14450705-14450757)
chr2 (87-131)||(8300180-8300224)
chr2 (88-132)||(13501036-13501080)
[»] chr7 (5 HSPs)
chr7 (43-136)||(25956471-25956563)
chr7 (43-124)||(1885599-1885675)
chr7 (43-136)||(5937361-5937454)
chr7 (87-133)||(48963995-48964041)
chr7 (101-133)||(10702456-10702488)
[»] scaffold0314 (1 HSPs)
scaffold0314 (43-132)||(8974-9061)
[»] chr3 (1 HSPs)
chr3 (43-135)||(34834869-34834960)
[»] chr4 (9 HSPs)
chr4 (87-133)||(39619045-39619091)
chr4 (43-133)||(13307903-13307993)
chr4 (88-138)||(37496786-37496836)
chr4 (87-136)||(5998886-5998935)
chr4 (43-124)||(44362692-44362773)
chr4 (43-74)||(11797630-11797661)
chr4 (87-125)||(21152895-21152933)
chr4 (102-138)||(4790785-4790821)
chr4 (68-136)||(10635053-10635121)
[»] scaffold0122 (1 HSPs)
scaffold0122 (82-136)||(10247-10301)
[»] chr1 (2 HSPs)
chr1 (87-133)||(18950996-18951041)
chr1 (44-77)||(7888122-7888155)
[»] chr5 (4 HSPs)
chr5 (95-135)||(9031879-9031919)
chr5 (66-133)||(21319877-21319944)
chr5 (43-136)||(7621170-7621268)
chr5 (41-78)||(8420051-8420088)
[»] scaffold0504 (1 HSPs)
scaffold0504 (87-138)||(8640-8691)
[»] chr8 (3 HSPs)
chr8 (43-76)||(10002163-10002196)
chr8 (43-75)||(4298887-4298919)
chr8 (47-75)||(24295138-24295166)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 785530 - 785249
Alignment:
Q  1 acggacactgacacggacacggataaaattttcnnnnnnntaacataatttaatgtaatcacaagtgtcggt-----------gtcggatatgatgtgtg 89  Q
    |||||||| ||||||||||| ||||||||||||       | |||||||| |||||||||||||||||||||           |||| | ||||||||||    
T  785530 acggacacagacacggacactgataaaattttcaaaataatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtcgaacatgatgtgtg 785431  T
Q  90 tcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggtggttacatagtgtaacttttacaaaattacactggttcaacttagtttagg 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785430 tcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggtggttacatagtgtaacttttacaaaattacactggttcaacttagtttagg 785331  T
Q  190 taaataatcatgatgctaaacatacacatagttttaactgcaactgtttgcgttgtggagaaataaatttgatgttgatgtc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785330 taaataatcatgatgctaaacatacacatagttttaactgcaactgtttgcgttgtggagaaataaatttgatgttgatgtc 785249  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 1334687 - 1334774
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgca 130  Q
    |||||||| ||||||||||||| ||||||||||| | | |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  1334687 acataattcaatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 26402713 - 26402624
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 132  Q
    |||||||| | ||||||||||||||||||||||||| | |||   ||| |||||||  |||||  |||||||||||||||||||||||||    
T  26402713 acataattcagtgtaatcacaagtgtcggtgtcggacacgatacatgttggacaccgagacacttcttcaatcagaagtgtccgtgcaac 26402624  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 32225414 - 32225330
Alignment:
Q  52 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 136  Q
    |||||||||||| |||||||||||||| | ||    ||||||||||| |||||||||||||||||| |||||  ||||| |||||    
T  32225414 aatgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacacaccttcaatcaggagtgtttgtgcagcagag 32225330  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 26178527 - 26178602
Alignment:
Q  61 acaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 136  Q
    |||||| ||||||||||| | ||   |||||||||| | ||||| ||||||||||||||||||||||||| |||||    
T  26178527 acaagtatcggtgtcggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtccgtgcatcagag 26178602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 6751915 - 6751880
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcgga 78  Q
    |||||||| |||||||||||||||||||||||||||    
T  6751915 acataattcaatgtaatcacaagtgtcggtgtcgga 6751880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 19369889 - 19369924
Alignment:
Q  101 gacacaccttcaatcagaagtgtccgtgcaacagag 136  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19369889 gacacgccttcaatcagaagtgtccgtgcaacagag 19369924  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 34197186 - 34197237
Alignment:
Q  87 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 138  Q
    |||||||| ||||||||||||||||||  ||||||||| |||||| ||||||    
T  34197186 gtgtcggagaccaggacacaccttcaactagaagtgtcagtgcaatagaggt 34197237  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 19369843 - 19369876
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcg 76  Q
    |||||||| |||||||||||||||||||||||||    
T  19369843 acataattcaatgtaatcacaagtgtcggtgtcg 19369876  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 43586038 - 43585943
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 138  Q
    |||||||| ||||||||||||||||||||||||||| | |||  ||||| |||||  |||||||||||||||||||||||| ||||||||||||||    
T  43586038 acataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgttcgtgcaacagaggt 43585943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 14450757 - 14450705
Alignment:
Q  86 tgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 138  Q
    |||||| |||||| ||||||  |||||||||||||||||||||||||||||||    
T  14450757 tgtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaacagaggt 14450705  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 8300224 - 8300180
Alignment:
Q  87 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaa 131  Q
    |||| ||||||| |||||| ||||||||||||||||||| |||||    
T  8300224 gtgttggacaccgggacacgccttcaatcagaagtgtccatgcaa 8300180  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 13501080 - 13501036
Alignment:
Q  88 tgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 132  Q
    ||||||||  || |||||||||||||||||||||||| |||||||    
T  13501080 tgtcggacgtcaagacacaccttcaatcagaagtgtcggtgcaac 13501036  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 25956471 - 25956563
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 136  Q
    |||||||| ||||||||||||||||||||||||||| | |||   ||||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  25956471 acataattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggaca-cgggacacgccttcaatcagaagtgtccgtgcaatagag 25956563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 1885599 - 1885675
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtc 124  Q
    |||||||| |||||||||||||||||||||||||    || || ||||||||||||||||||||| ||||||||||||||||    
T  1885599 acataattcaatgtaatcacaagtgtcggtgtcg----tgttg-gtgtcggacaccaggacacacgttcaatcagaagtgtc 1885675  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 5937454 - 5937361
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 136  Q
    |||||||| |||||||||||||||||| |||||||  | |||   ||||||||||||| | || ||||||||  ||||||||||||||| ||||    
T  5937454 acataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacaccagaatacgccttcaatatgaagtgtccgtgcaatagag 5937361  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 48964041 - 48963995
Alignment:
Q  87 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 133  Q
    |||||| ||||| ||||| |||||||||||||||||||| |||||||    
T  48964041 gtgtcgaacaccgggacataccttcaatcagaagtgtccatgcaaca 48963995  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 10702488 - 10702456
Alignment:
Q  101 gacacaccttcaatcagaagtgtccgtgcaaca 133  Q
    |||||||||||||||||||||||| ||||||||    
T  10702488 gacacaccttcaatcagaagtgtcggtgcaaca 10702456  T

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Target: scaffold0314 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 8974 - 9061
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 132  Q
    |||||||| || |||||||||||||||||||||  || |  ||||||||||||||| |||||| |||||||||||||||||| |||||||    
T  8974 acataattcaacgtaatcacaagtgtcggtgtc--atgtcgtgtgtgtcggacaccgggacacgccttcaatcagaagtgtctgtgcaac 9061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 34834960 - 34834869
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacaga 135  Q
    |||||||| ||| ||||||| ||| |||||||||||  ||||   ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  34834960 acataattcaat-taatcacgagtatcggtgtcggacttgatacatgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 39619091 - 39619045
Alignment:
Q  87 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 133  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  39619091 gtgtcggacaccgggacacaccttcaatcagaagtgtccgtgcaaca 39619045  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 13307903 - 13307993
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 133  Q
    |||||||| ||||||||||||||||| ||||||||| | ||   ||||| ||||||| ||||  |||||||||||||||||  ||||||||    
T  13307903 acataattcaatgtaatcacaagtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaagtgttggtgcaaca 13307993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 37496786 - 37496836
Alignment:
Q  88 tgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 138  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  37496786 tgtcggacaccgggacacgccttcaatcataagtgtccgtgcaacagaggt 37496836  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 5998886 - 5998935
Alignment:
Q  87 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 136  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  5998886 gtgtcggacacctggacacaccttcaatcataagtgtcggtgcaacagag 5998935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 44362692 - 44362773
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtc 124  Q
    |||||||||||||||||||||||||| |||||| || | ||   || ||||||| | ||||||||||| |||||||||||||    
T  44362692 acataatttaatgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcgggacacaccttaaatcagaagtgtc 44362773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 11797661 - 11797630
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgt 74  Q
    ||||||||||||||||||||||||||||||||    
T  11797661 acataatttaatgtaatcacaagtgtcggtgt 11797630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 21152933 - 21152895
Alignment:
Q  87 gtgtcggacaccaggacacaccttcaatcagaagtgtcc 125  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  21152933 gtgtcggacatcaggacactccttcaatcagaagtgtcc 21152895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 4790785 - 4790821
Alignment:
Q  102 acacaccttcaatcagaagtgtccgtgcaacagaggt 138  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  4790785 acacaccttcaatcagaagtgtcggtgctacagaggt 4790821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 10635053 - 10635121
Alignment:
Q  68 tcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 136  Q
    |||||||| || |||||  |||||||||||| |||||   ||||||||||||| || ||||||||||||    
T  10635053 tcggtgtcagacatgatacgtgtcggacacccggacaactcttcaatcagaagagttcgtgcaacagag 10635121  T

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Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 10301 - 10247
Alignment:
Q  82 gatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 136  Q
    |||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  10301 gatgcgtgtcggacagcaggacacaccttcaatcagaagtgtctgtgcaagagag 10247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 18950996 - 18951041
Alignment:
Q  87 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 133  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  18950996 gtgtcggacaccaggacacaccttcaatcagaagtgt-cgtgcaaca 18951041  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 7888122 - 7888155
Alignment:
Q  44 cataatttaatgtaatcacaagtgtcggtgtcgg 77  Q
    ||||||||||||||||||||||||||||||||||    
T  7888122 cataatttaatgtaatcacaagtgtcggtgtcgg 7888155  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 9031919 - 9031879
Alignment:
Q  95 caccaggacacaccttcaatcagaagtgtccgtgcaacaga 135  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  9031919 caccaggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 21319944 - 21319877
Alignment:
Q  66 tgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 133  Q
    ||||||||||||| | ||||| | ||| ||||||||| | |||||||||||||||||| |||||||||    
T  21319944 tgtcggtgtcggacacgatgtatatcgaacaccaggatagaccttcaatcagaagtgttcgtgcaaca 21319877  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 7621268 - 7621170
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtg-----tcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 136  Q
    |||||||||||||||||||||||| ||||||     || || | |||   | ||||||| ||||||||  |||||||||||||||||||||||||||||    
T  7621268 acataatttaatgtaatcacaagtatcggtgtcatatcagacacgatacttatcggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagag 7621170  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 8420051 - 8420088
Alignment:
Q  41 taacataatttaatgtaatcacaagtgtcggtgtcgga 78  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  8420051 taacataattcaatgtaattacaagtgtcggtgtcgga 8420088  T

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Target: scaffold0504 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 8691 - 8640
Alignment:
Q  87 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 138  Q
    ||||| |||||| |||||  ||||||||||||||||||||||||||||||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaacagaggt 8640  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 10002196 - 10002163
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtcg 76  Q
    ||||||||||||||||||||| ||||||||||||    
T  10002196 acataatttaatgtaatcacatgtgtcggtgtcg 10002163  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 4298919 - 4298887
Alignment:
Q  43 acataatttaatgtaatcacaagtgtcggtgtc 75  Q
    ||||||||||||||||| |||||||||||||||    
T  4298919 acataatttaatgtaattacaagtgtcggtgtc 4298887  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 24295166 - 24295138
Alignment:
Q  47 aatttaatgtaatcacaagtgtcggtgtc 75  Q
    |||||||||||||||||||||||||||||    
T  24295166 aatttaatgtaatcacaagtgtcggtgtc 24295138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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