View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7231_low_21 (Length: 251)
Name: NF7231_low_21
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_21 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 9346245 - 9346480
Alignment:
| Q |
16 |
atcattcaacaacaatccacataaagatggcactaatcatggatatacataaactaatgttcattaagattttctcacataacataatcattcaagggaa |
115 |
Q |
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| T |
9346245 |
atcattcaacaacaatccacataaagatggcactaatcatggatatacataaactagtgttcattaagattttctcacataacataatcatttaagggaa |
9346344 |
T |
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| Q |
116 |
ggatttctatctagagaactcacctaagattctggtacaacttcaaacttctaagcttctacaatcaaaccctaatgcatgctctcttgctaagatcatc |
215 |
Q |
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| T |
9346345 |
ggagttctatctagagaactcacctaagattctggtacaacttcaaacttctaagcttctacaatcaaaccctaatgcatgctctcttgctaagatcatc |
9346444 |
T |
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| Q |
216 |
caactttgagtgagattgagttaagaccaaaatgat |
251 |
Q |
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| T |
9346445 |
caactttaagtgagattgagttaagaccaaaatgat |
9346480 |
T |
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 23295963 - 23296033
Alignment:
| Q |
180 |
tcaaaccctaatgcatgctctcttgctaagatcatccaactttgagtgagattgagttaagaccaaaatga |
250 |
Q |
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| T |
23295963 |
tcaaaccctaactcttgctctcttgctaagatcatccaactttgattgagcttgagttaagaccaaaatga |
23296033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 11244757 - 11244689
Alignment:
| Q |
120 |
ttctatctagagaactcacctaagattctggtacaacttcaaacttctaagcttctacaatcaaacccta |
189 |
Q |
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| T |
11244757 |
ttctttctagagaactcacctagatttctggta-aacttcaaactcctatgcttctacaaccaaacccta |
11244689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 29790297 - 29790229
Alignment:
| Q |
120 |
ttctatctagagaactcacctaagattctggtacaacttcaaacttctaagcttctacaatcaaacccta |
189 |
Q |
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| T |
29790297 |
ttctatctagagaactcacctaaaattctggt-gaacttcaagcttctaagtctctaaaaccaaacccta |
29790229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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