View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7231_low_23 (Length: 247)
Name: NF7231_low_23
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_23 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 1196551 - 1196784
Alignment:
| Q |
14 |
acatcacaaccttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaattgttcttgcatgcaaccatgtttatccacaaacc |
113 |
Q |
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| T |
1196551 |
acatcacaaacttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaatcgttcttgtatgcaaccatgtttatccacaaacc |
1196650 |
T |
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| Q |
114 |
tcaaaataatagccatttgctccctaagagattcatcacacgattcgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
213 |
Q |
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| T |
1196651 |
tcaaaataatagccatttgctccctaagagattcatcacacgatttgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
1196750 |
T |
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| Q |
214 |
cactttacaagacatgatttgcaaaagttccttt |
247 |
Q |
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| T |
1196751 |
cactttacaagacatgatttgcaaaagttccttt |
1196784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 1286879 - 1287110
Alignment:
| Q |
14 |
acatcacaaccttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaattgttcttgcatgcaaccatgtttatccacaaacc |
113 |
Q |
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| T |
1286879 |
acatcacaaacttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaatcgttcttgtatgcaaccatgtttatccacaaacc |
1286978 |
T |
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| Q |
114 |
tcaaaataatagccatttgctccctaagagattcatcacacgattcgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
213 |
Q |
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| T |
1286979 |
tcaa--taatagccatttgctccctaagagattcatcacacgattcgtcaacaattatgaaaaatttagaatctccaatctcttcccgaatgtagtgttt |
1287076 |
T |
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| Q |
214 |
cactttacaagacatgatttgcaaaagttccttt |
247 |
Q |
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| T |
1287077 |
cactttacaagacatgatttgcaaaagttccttt |
1287110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 20554794 - 20555027
Alignment:
| Q |
14 |
acatcacaaccttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaattgttcttgcatgcaaccatgtttatccacaaacc |
113 |
Q |
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| T |
20554794 |
acatcacaaacttcttttttaagtgtgatagccatggtgtcatttacatgcacaagctcaaaaaatcgttcttgtatgcaaccatgtttatccacaaacc |
20554893 |
T |
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| Q |
114 |
tcaaaataatagccatttgctccctaagagattcatcacacgattcgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
213 |
Q |
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| T |
20554894 |
tcaaaataatagccatttgctccctaagagattcatcacgcgattcgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
20554993 |
T |
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| Q |
214 |
cactttacaagacatgatttgcaaaagttccttt |
247 |
Q |
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| T |
20554994 |
cactttacaagacatgatttgcaaaagttccttt |
20555027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 27178205 - 27178136
Alignment:
| Q |
90 |
tgcaaccatgtttatccacaaacctcaaaataatagccatttgctccctaagagattcatcacacgattc |
159 |
Q |
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| T |
27178205 |
tgcaaccatttttatccacaaacatcaaaatagtagacatatgctctcttagggattcatcacaagattc |
27178136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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