View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7231_low_25 (Length: 240)
Name: NF7231_low_25
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 40193348 - 40193129
Alignment:
| Q |
11 |
catcatcctcttcttcctttctccttctctgtaagtaaacacggttcagaccttcccccaccatcgccggtcaccactccgtcgtcctaacccaccactg |
110 |
Q |
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| T |
40193348 |
catcatcctcttcttcctttctccttctct----ataaacacggttcagaccttcccccaccatcgccggtcacaactccgccgtcctaacccaccactg |
40193253 |
T |
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| Q |
111 |
aaacgcaaactcatcttctccaactcttccatcatcaccgcaccggtgagagtgaccagacaagagagaactccggcgaagagatggaaacaccaccatc |
210 |
Q |
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||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40193252 |
aaacgaaaactcatcttctccgactcttccatcatcac--caccggtgagagtgaccagacaagagagaactccggcgaagaggtggaaacaccaccatc |
40193155 |
T |
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| Q |
211 |
aacgtcctcatcaccaccatcttcca |
236 |
Q |
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| T |
40193154 |
accgtcctcatcaccaccatcttcca |
40193129 |
T |
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