View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7231_low_29 (Length: 232)

Name: NF7231_low_29
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7231_low_29
NF7231_low_29
[»] chr6 (9 HSPs)
chr6 (11-215)||(11133335-11133539)
chr6 (12-215)||(11197064-11197267)
chr6 (19-215)||(11276295-11276491)
chr6 (12-215)||(11156611-11156814)
chr6 (19-215)||(11170911-11171107)
chr6 (54-215)||(11161490-11161651)
chr6 (54-215)||(11200233-11200394)
chr6 (19-215)||(11209733-11209929)
chr6 (12-215)||(11241070-11241273)
[»] scaffold1207 (1 HSPs)
scaffold1207 (60-215)||(1226-1381)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 11133539 - 11133335
Alignment:
Q  11 gagtgagatgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgct 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11133539 gagtgatatgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacattttgctgct 11133440  T
Q  111 gagcaaatatcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttact 210  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11133439 gaggaaatatcatcaatggtattgacaaaaattcgtgagattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttact 11133340  T
Q  211 ttaat 215  Q
    |||||    
T  11133339 ttaat 11133335  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 11197267 - 11197064
Alignment:
Q  12 agtgagatgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctg 111  Q
    ||||| ||||| | |||||| || ||||||||||| | | | |||||||||||||  |||||||| || || ||||  |||||||| |||||| ||||||    
T  11197267 agtgatatgaagtcgtggcccttcaaagtaattggcgacctcaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctg 11197168  T
Q  112 agcaaatatcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactt 211  Q
    |  |||| ||||| ||||||||| |||||||    || || || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  11197167 aagaaatctcatcgatggtattggcaaaaatggccgagatagctgaagcttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactt 11197068  T
Q  212 taat 215  Q
    ||||    
T  11197067 taat 11197064  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 11276491 - 11276295
Alignment:
Q  19 tgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaat 118  Q
    |||| ||||||||||| ||||||||||||| | | |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||||||  ||||    
T  11276491 tgaagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttactgctgaagaaat 11276392  T
Q  119 atcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaat 215  Q
     ||||| ||||||||| | ||||| || || || |||||||  | |||||||| ||||||| ||||||| ||||||||||| ||||| |||||||||    
T  11276391 ctcatccatggtattggcgaaaatgcgcgagatagcagaagccttccttggattaacagtggaggatgttgttataactgtgcctgcatactttaat 11276295  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 11156814 - 11156611
Alignment:
Q  12 agtgagatgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctg 111  Q
    ||||| ||||| | |||||| || |||||||||||   | | |||||||||||||  |||||||| || || || |  |||||||| |||||| ||||||    
T  11156814 agtgatatgaagtcgtggcccttcaaagtaattggcaacctcaatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctg 11156715  T
Q  112 agcaaatatcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactt 211  Q
    |  |||| ||||| ||||||||| |||||||    || || || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  11156714 aagaaatctcatcgatggtattggcaaaaatggccgagatagctgaagtttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactt 11156615  T
Q  212 taat 215  Q
    ||||    
T  11156614 taat 11156611  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 11171107 - 11170911
Alignment:
Q  19 tgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaat 118  Q
    |||| ||||||||||| ||||||||||||| | | |||||||||||||  |||||||| || || ||||  ||||||||||||||| |||||||  ||||    
T  11171107 tgaagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaaacattttgctgctgaagaaat 11171008  T
Q  119 atcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaat 215  Q
     ||||| |||||||||   ||||| || || || ||||||   | ||||||||||| |||| ||||||| ||||||||||| ||||| |||||||||    
T  11171007 ctcatccatggtattggtgaaaatgcgcgagatagcagaaaccttccttggatcaatagtggaggatgttgttataactgtgcctgcatactttaat 11170911  T

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Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 54 - 215
Target Start/End: Complemental strand, 11161651 - 11161490
Alignment:
Q  54 aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg 153  Q
    |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||| ||  |||| ||||| |||||||||||||||||  | || ||||    
T  11161651 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg 11161552  T
Q  154 cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaat 215  Q
    | |||| ||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||||    
T  11161551 ctgaagcttaccttggatcaacagtgaaggatgttgttataattgtgcctacatactttaat 11161490  T

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Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 54 - 215
Target Start/End: Complemental strand, 11200394 - 11200233
Alignment:
Q  54 aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg 153  Q
    |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||| ||  |||| ||||| |||||||||||||||||  | || ||||    
T  11200394 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg 11200295  T
Q  154 cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaat 215  Q
    | |||| ||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||||    
T  11200294 ctgaagcttaccttggatcaacagtgaaggatgttgttataattgtgcctacatactttaat 11200233  T

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Target: chr6; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 11209929 - 11209733
Alignment:
Q  19 tgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaat 118  Q
    |||| ||||||||||| ||||||||||| | | |||||||||||||||  |||||||| || || || |  |||||||| |||||| |||||||  ||||    
T  11209929 tgaagttgtggccattcaaagtaattggcgacctaaatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctgaagaaat 11209830  T
Q  119 atcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaat 215  Q
     ||||| ||||||||| | ||||| || || |  |||||||  | |||||||||||||||| | ||||| ||||||||||| ||||| |||||||||    
T  11209829 ctcatccatggtattggcgaaaatgcgagagacagcagaagccttccttggatcaacagtggatgatgttgttataactgtgcctgcatactttaat 11209733  T

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Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 11241070 - 11241273
Alignment:
Q  12 agtgagatgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctg 111  Q
    ||||| ||||| |||||||| || ||||||||||| | | | |||||||||| ||  | | |||| || || ||||  |||||||| |||||  ||||||    
T  11241070 agtgatatgaagttgtggcccttcaaagtaattggcgacctgaatgacaaacacatgactattgttaactataatgacgaggaaaagcatttcgctgctg 11241169  T
Q  112 agcaaatatcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactt 211  Q
    |  |||| ||||| ||||||||| |||||||     | || || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  11241170 aagaaatctcatcgatggtattggcaaaaatggccaagatagctgaagcttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactt 11241269  T
Q  212 taat 215  Q
    ||||    
T  11241270 taat 11241273  T

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Target: scaffold1207 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 1381 - 1226
Alignment:
Q  60 aaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattgcagaag 159  Q
    |||||||  |||||||| || || ||||  |||||||| |||||| |||||||  |||| ||||| ||||||||| | ||||| || || |  |||||||    
T  1381 aaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatctcatccatggtattggcgaaaatgcgcgagacagcagaag 1282  T
Q  160 tttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaat 215  Q
      | |||||||||||||||| ||||||| ||||||||||| ||||| |||||||||    
T  1281 ccttccttggatcaacagtggaggatgttgttataactgtgcctgcatactttaat 1226  T

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