View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7231_low_30 (Length: 229)
Name: NF7231_low_30
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33940614 - 33940385
Alignment:
| Q |
1 |
tcaagcaatatatatcatgagataaacaagggaatagaaacaaagttgtgcaaaagcatagaaaaatctgcaatgagaaattgtcaaaaatataaagcgt |
100 |
Q |
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| T |
33940614 |
tcaagcaatatacatcatgagataagcaagggaatagaaacaaagttgtgcaaaagcatagaaaaatctgcaatgagcaattttcaaaaatataaagcgt |
33940515 |
T |
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| Q |
101 |
aagtcccctcatgcataaaccca-gacaaatatgagatttaatatacgaattaacatatttaagaagtaacaagctcagagattagtattgaaaagtcaa |
199 |
Q |
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| T |
33940514 |
aagtcccctcatgcataaagccaggacaaatatgagatttaatatacgaattaacatatttaagaagtaacaagctcagagactagtattgaaaagtcaa |
33940415 |
T |
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| Q |
200 |
ctatggatactaaagcacacttacaaataa |
229 |
Q |
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| T |
33940414 |
ctatgaatactaaagcacacttacaaataa |
33940385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 33940227 - 33940167
Alignment:
| Q |
144 |
tacgaattaacatatttaagaagtaacaagctcagagattagtattgaaaagtcaactatg |
204 |
Q |
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||||||||||||||||||||| | |||||||| ||| | ||||||||||||||| |||| |
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| T |
33940227 |
tacgaattaacatatttaagatgcaacaagctacaagacttgtattgaaaagtcaagtatg |
33940167 |
T |
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