View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7231_low_31 (Length: 221)
Name: NF7231_low_31
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 40192887 - 40193004
Alignment:
| Q |
104 |
atgtcatagctcacagccaaagctattacacattctcacccctccacaactctccaccggcgaccactgtcgctgtcctccgatctagtttctctgcaaa |
203 |
Q |
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| T |
40192887 |
atgtcatagctcacaaccacagctattacacattctcatccctccacaactctccaccagcgaccgccgtcgctgtcctccgatctaatttctctgcaaa |
40192986 |
T |
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| Q |
204 |
aacgaacctaaacaaaac |
221 |
Q |
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| T |
40192987 |
aacgaacctaaacaaaac |
40193004 |
T |
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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 8816279 - 8816357
Alignment:
| Q |
133 |
acattctcacccctccacaactctccaccggcgaccactgtcgctgtc--ctccgatctagtttctctgcaaaaacgaa |
209 |
Q |
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| T |
8816279 |
acattctcacccctccacaactctccaccggcgaccaccgtcgttctcctctccgatcgattttgtctgcaaaaacgaa |
8816357 |
T |
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