View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7231_low_4 (Length: 481)

Name: NF7231_low_4
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7231_low_4
NF7231_low_4
[»] chr3 (1 HSPs)
chr3 (255-466)||(24618366-24618577)
[»] chr8 (10 HSPs)
chr8 (256-466)||(1343978-1344188)
chr8 (256-466)||(1355399-1355609)
chr8 (84-210)||(1355223-1355349)
chr8 (287-466)||(1361088-1361261)
chr8 (157-210)||(1344238-1344291)
chr8 (415-466)||(1350424-1350475)
chr8 (420-456)||(11368947-11368983)
chr8 (287-359)||(1350615-1350687)
chr8 (377-421)||(1350559-1350603)
chr8 (174-219)||(1361280-1361329)
[»] chr2 (1 HSPs)
chr2 (325-391)||(43364468-43364534)
[»] chr7 (1 HSPs)
chr7 (425-459)||(13590464-13590498)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 255 - 466
Target Start/End: Complemental strand, 24618577 - 24618366
Alignment:
Q  255 ctatgcaataattcccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttcc 354  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24618577 ctatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttcc 24618478  T
Q  355 ctgtcaattttttcctgcaagacctgatcaatctcatgattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtcttttt 454  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24618477 ctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtcttttt 24618378  T
Q  455 tctttcttctgt 466  Q
    ||||||||||||    
T  24618377 tctttcttctgt 24618366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 256 - 466
Target Start/End: Complemental strand, 1344188 - 1343978
Alignment:
Q  256 tatgcaataattcccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc 355  Q
    |||||||||||| || |||||||||||||| |||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  1344188 tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc 1344089  T
Q  356 tgtcaattttttcctgcaagacctgatcaatctcatgattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtctttttt 455  Q
    |||||||| ||||||| ||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  1344088 tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatcatcttcttccttcaaagaagaattcttctgttgatctttttt 1343989  T
Q  456 ctttcttctgt 466  Q
    |||||||||||    
T  1343988 ctttcttctgt 1343978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 256 - 466
Target Start/End: Original strand, 1355399 - 1355609
Alignment:
Q  256 tatgcaataattcccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc 355  Q
    |||||||||||| || |||||||||||||| |||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  1355399 tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc 1355498  T
Q  356 tgtcaattttttcctgcaagacctgatcaatctcatgattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtctttttt 455  Q
    |||||||| ||||||| ||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  1355499 tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatcatcttcttccttcaaagaagaattcttctgttgatctttttt 1355598  T
Q  456 ctttcttctgt 466  Q
    |||||||||||    
T  1355599 ctttcttctgt 1355609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 1355223 - 1355349
Alignment:
Q  84 tcatatcagaattctaattattatgttgtaacctgcaagagtaaaaatataattaatgccaatttatactaatgatttctaatcctgaacaagatttgct 183  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||    
T  1355223 tcatatcagatttctaattattatgctgtaacctgcaagagtaaaaatataataaatgtcaacttatactaatgatttctaatcctgaacaagatttgct 1355322  T
Q  184 aatattgagaagagttttgtccataag 210  Q
    |||||||||||||||||||||||||||    
T  1355323 aatattgagaagagttttgtccataag 1355349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 287 - 466
Target Start/End: Complemental strand, 1361261 - 1361088
Alignment:
Q  287 ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaat 386  Q
    |||||||||||||| || | |||||||| | || ||| ||||||||||| |||||||||||||||||  ||||| |  ||      ||| | ||||||||    
T  1361261 ctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcatt------aagtcatgatcaat 1361168  T
Q  387 ctcatgattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtcttttttctttcttctgt 466  Q
    ||||| || |||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1361167 ctcatcatcaaactcaaccacaggaccctcttcttccttcatagaagaattcttctgttggtcttttttctttcttctgt 1361088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 1344291 - 1344238
Alignment:
Q  157 gatttctaatcctgaacaagatttgctaatattgagaagagttttgtccataag 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1344291 gatttctaatcctgaacaagatttgctaatattaagaagagttttgtccataag 1344238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 466
Target Start/End: Complemental strand, 1350475 - 1350424
Alignment:
Q  415 tcttcttccttcaaagaagaattcttctgttggtcttttttctttcttctgt 466  Q
    |||||||| |||| ||||||||||||||||||||||||||||||| ||||||    
T  1350475 tcttcttctttcatagaagaattcttctgttggtcttttttcttttttctgt 1350424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 11368983 - 11368947
Alignment:
Q  420 ttccttcaaagaagaattcttctgttggtcttttttc 456  Q
    |||||||||||||||||||||||||||||||||||||    
T  11368983 ttccttcaaagaagaattcttctgttggtcttttttc 11368947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 1350687 - 1350615
Alignment:
Q  287 ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc 359  Q
    |||||||| ||||| || | ||||||||| |||  || ||||||||||| ||||||||||||||||| |||||    
T  1350687 ctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 1350615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 1350603 - 1350559
Alignment:
Q  377 cctgatcaatctcatgattaaactcaaccacaggatcatcttctt 421  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||    
T  1350603 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 1350559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 1361329 - 1361280
Alignment:
Q  174 aagatttgctaata----ttgagaagagttttgtccataaggttactcat 219  Q
    ||||||||||||||    |||||||||||||| |||||||||||||||||    
T  1361329 aagatttgctaataattgttgagaagagttttatccataaggttactcat 1361280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 43364468 - 43364534
Alignment:
Q  325 tttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcat 391  Q
    ||||||||||| |||||||||||||||||||| |||||| || | || ||| || ||||||||||||    
T  43364468 tttaatctgcgggcaaattcttccacttccctatcaattcttgcttgtaaggccggatcaatctcat 43364534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 459
Target Start/End: Complemental strand, 13590498 - 13590464
Alignment:
Q  425 tcaaagaagaattcttctgttggtcttttttcttt 459  Q
    |||||||||||||||||||||||| ||||||||||    
T  13590498 tcaaagaagaattcttctgttggtgttttttcttt 13590464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University