View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7231_low_5 (Length: 415)
Name: NF7231_low_5
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_5 |
 | |
|
| [»] scaffold0738 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0073 (1 HSPs) |
| | |
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| [»] scaffold0537 (1 HSPs) |
| | |
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| [»] scaffold0752 (1 HSPs) |
| | |
|
| [»] scaffold0544 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0185 (1 HSPs) |
| | |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0547 (1 HSPs) |
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| [»] scaffold0269 (2 HSPs) |
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| [»] scaffold0739 (2 HSPs) |
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| [»] scaffold0207 (1 HSPs) |
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| [»] scaffold0450 (1 HSPs) |
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| [»] scaffold0297 (1 HSPs) |
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| [»] scaffold0132 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 22153406 - 22152999
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22153406 |
agcatctgcatgctttagcaatagtttccacagtgatggtaatctccatacccatcactgttgatctgatttgtgttccattgaatggtcttaaacccat |
22153307 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||| ||||||||| |||| |||||||||| |||||||| | |
|
|
| T |
22153306 |
ttcttctcttgatttccctttgagtctagggttctcctttacagccctgactttttcttctttggcgtttcttttgtcaaacacctctggctttacccag |
22153207 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22153206 |
aagtccttgacctggttttcataggaaggtttgttgatcatcgtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
22153107 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |
|
|
| T |
22153106 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtataatcatcgttctttccttgagcacataggattcgttggt |
22153007 |
T |
|
| Q |
401 |
gtccatct |
408 |
Q |
| |
|
||| |||| |
|
|
| T |
22153006 |
gtcaatct |
22152999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23787173 - 23787570
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||| |||| || |||||| ||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||| |||||| |
|
|
| T |
23787173 |
agcatctgcatgctctagcgattatttccactgtgatggtaatttccatacccatcactgttgatctaatctctgttccattgaatggtcttagacccat |
23787272 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
|||| ||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| | |||| | |
|
|
| T |
23787273 |
ttctgttcttgattttactttgagtttgggattctcctttacagccctgacttcttcttctttaacgtttcttctgtcgaacacttctgccctaacccag |
23787372 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| |||||||| || ||||||||||| ||||| || ||||||||||||||||||| ||| |||||||||| ||| ||||| ||||||||||| || |||| |
|
|
| T |
23787373 |
aaatccttgactagattttcataggaaggtctgtttatcatagtgaagtaatccagcatgtgttgagcagaaaagtaacccttgatatccattccattcc |
23787472 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
23787473 |
tttctaaggaaccaaaatctacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttctttgagaacataggattagttg |
23787570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0738 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0738
Description:
Target: scaffold0738; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 2 - 408
Target Start/End: Complemental strand, 1117 - 711
Alignment:
| Q |
2 |
gcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccatt |
101 |
Q |
| |
|
|||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1117 |
gcatctacattctttagcaatagtttctactgtgatggtaatctccatacccatcactgttgatctgatttctgttccattgaatggtcttaaacccatt |
1018 |
T |
|
| Q |
102 |
tcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctga |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| || |
|
|
| T |
1017 |
tcttctcttgatttccctttgagtctggggttctcctttacagccctgacttcttcttctttagcgtttttcctgtcgaacacctctgcctttacataga |
918 |
T |
|
| Q |
202 |
agtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcct |
301 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
917 |
agtccttgaccaggttttcatatgaaggtctgttgatcatcgtgaagtaatccaacatatgttgagcaacaaaataacctttgatatccataccgttcct |
818 |
T |
|
| Q |
302 |
ttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttgatg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
817 |
ttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgtttagaggtatagtcatcgttctatccttgagcacataggattcgttggtg |
718 |
T |
|
| Q |
402 |
tccatct |
408 |
Q |
| |
|
|| |||| |
|
|
| T |
717 |
tcgatct |
711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 18547086 - 18547493
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||| ||||||| || |||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
18547086 |
agcatctgcatgctctagcaattgtatccaccgtgatgggaatctccatacccatcactgttgatctaatttttgttccattgaatggtcttaaacccat |
18547185 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| | |
|
|
| T |
18547186 |
ttcttctcttgatttccctttgagtctggggttctcttttacagccctgacttcttcttctttagtgtttcttctgtaaaacacctctgcctttacccag |
18547285 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
18547286 |
aagtccttgaccaggttttcataggacggtctgttgatcatagtgaagtaatccaacatgtgttgagcagcaaaatatcctttgatatccattatgttcc |
18547385 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttgat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
18547386 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggattcgttggt |
18547485 |
T |
|
| Q |
401 |
gtccatct |
408 |
Q |
| |
|
||| |||| |
|
|
| T |
18547486 |
gtcaatct |
18547493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 2 - 408
Target Start/End: Original strand, 17783236 - 17783642
Alignment:
| Q |
2 |
gcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
17783236 |
gcatctgcatgctttagcaatagtttctactgtgatggtaatctccatatccgtcactgttgatctgatttctgttccattgaatggtcttaaactcatt |
17783335 |
T |
|
| Q |
102 |
tcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctga |
201 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
17783336 |
tcttctcttgatttccctttaagtatgaggttctcctttacagccctgacttcttcgtctttagcgtctcttctgtcgaacacctctgcctttacctaga |
17783435 |
T |
|
| Q |
202 |
agtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcct |
301 |
Q |
| |
|
| |||||||||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
17783436 |
aatccttgaccaggttttcatatgaaggtctgttaatcatcgtgaagtaatccaacatatgttgagcagcaaaatactctttgatgtccataccgttcct |
17783535 |
T |
|
| Q |
302 |
ttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttgatg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| || |
|
|
| T |
17783536 |
ttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctatccttaagcacataggattcgttggtg |
17783635 |
T |
|
| Q |
402 |
tccatct |
408 |
Q |
| |
|
|| |||| |
|
|
| T |
17783636 |
tcgatct |
17783642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 19458486 - 19458091
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
||||| ||||||||||||| || ||||| | |||||||||||||||||||||||||| | || |||||||| | || ||||| | |||| |||||| |
|
|
| T |
19458486 |
agcatttgcatgctttagcgattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctatacctttgaacgaacttagacccat |
19458387 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||||||||||||| |||| | || ||||||||||| |||| ||||| ||| | ||||||| | ||||||||||| |||||| || | | |
|
|
| T |
19458386 |
ttccgttcttgatttccct--gagtctaggattctcctttactaccctagtttcttcttcctcagcgtttttcctgtcgaacacttctgcccctaacgag |
19458289 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| || ||||| || || ||||| || ||||| || | ||| ||||||||||| ||||| |||||||||||||||||| ||||| ||||| || |||| |
|
|
| T |
19458288 |
aaatctttgactagattctcatatgagggtctttttaacattccgaagtaatccatcatattttgagcagcaaaataacccttgatgtccattccattcc |
19458189 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
||||||| ||||||||||| || | ||||| ||||||||||||||| ||||||| || | |||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
19458188 |
tttccaatgaaccaaaatctacagcagcttcgacttgaacatccagtctgttcagtggaacggtcactgttctttccttgagaacatatgatttgttg |
19458091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1654494 - 1654551
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
58 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
1654494 |
agcatctgcatgctttagcaattgtttctacagtgatggtaatctccatacccatcac |
1654551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 55831 - 55434
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
55831 |
agcatttgcatgctttagaaatagtttccaccatgatggtaatttccatacccatcactgttgatctaatttctattccattaaatggtcttaaacccat |
55732 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
|||| |||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||| | |
|
|
| T |
55731 |
ttctgctcttgatttccctttgagtctgggatcctcctttacagccctgacttcttcttcttcagcgtttcttctatcgaacacctctacctttacccag |
55632 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||| |
|
|
| T |
55631 |
aagtccttgaccaggttttcataggaaggtgtattgatcatagtgaagtaatccaacatatgttgagcagcaaagtatcccttgatatccatttcgttcc |
55532 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
55531 |
tttccaaggaaccaaaatctacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcattctttccttgagcacataggattcgttg |
55434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 20880123 - 20879726
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
20880123 |
agcatctgcatgctttagcaatagtttccaccgtgatggtaatctccatacccatcactgttgatctgatttctgttccattaaatggtcttaaactcat |
20880024 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||| || | |||| ||| |||||||||||||||||||| | |
|
|
| T |
20880023 |
ttcttctcttgattttcctttgagtctggggttctcctttacaaccctgacttcttcttcttttgcatctcttatgttgaacacctctgcctttacccag |
20879924 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||| || | ||||||||||||| |||| |||||||||||||||| |||||| |
|
|
| T |
20879923 |
aagtccttgaccaggttttcataggaaggtctgttgatcatagtgaagtagtcaagcatatgttgagcaacaaagaaacctttgatatccatttcgttcc |
20879824 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||| |||| |
|
|
| T |
20879823 |
tttccaaggaaccaaaatcaacggtgacttctacttgaacattcagcttgttcagaggtataatcatcgttctttccttgagtacataggattcgttg |
20879726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 22646487 - 22646697
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| | || |||||||| ||||| ||||| ||| ||| |||||| |
|
|
| T |
22646487 |
agcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaacggttttagacccat |
22646586 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||| ||||||||||||||| | || || |||||||| ||| |||||| |||| ||||| | | ||||||||||| |||||| | |||| | |
|
|
| T |
22646587 |
ttccgttctcgatttccctttgagtctaggattttcctttactaacctagcttcttcctcttcagcgtctttcctgtcgaacacttctgccctaacccag |
22646686 |
T |
|
| Q |
201 |
aagtccttgac |
211 |
Q |
| |
|
|| |||||||| |
|
|
| T |
22646687 |
aaatccttgac |
22646697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 44818967 - 44818939
Alignment:
| Q |
93 |
aaacccatttcttctcttgatttcccttt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44818967 |
aaacccatttcttctcttgatttcccttt |
44818939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 62260 - 62661
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
62260 |
agcatctgcatgctctagcaattgtttccaccgtgatggtaatctccatacccatcactgttgatctgatttctgttccattaaatggtcttaaacccat |
62359 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcg----aacacctctgcctttac |
196 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
62360 |
ttctgttcttgatttccctttgagtctgggattcccctttacagccctgacttcttcttcttcagcgtttcttctgtcggtcgaaaacctctgcctttac |
62459 |
T |
|
| Q |
197 |
cctgaagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccg |
296 |
Q |
| |
|
|| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
62460 |
ccagaagtccttgactaggttttcataggaaggtctgttgatcatagtgaagtaatccaacatatgttgagcagcaaagtaacctttgatatccatttag |
62559 |
T |
|
| Q |
297 |
ttcctttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgt |
396 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||| || |
|
|
| T |
62560 |
ttcctttccaaggaaccaagatctacggtggcttctacttgaacatccagtttgttcagaggtacagtcaccgttctttccttgagaacataagattcgt |
62659 |
T |
|
| Q |
397 |
tg |
398 |
Q |
| |
|
|| |
|
|
| T |
62660 |
tg |
62661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0537 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 109 - 393
Target Start/End: Complemental strand, 2016 - 1732
Alignment:
| Q |
109 |
ttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctgaagtcctt |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2016 |
ttgatttccctttgagtctggggttctcctttacagccttgacttcttcttcttcaacgtttcttctgtcgaacacctctgcctttacctagaagtcctt |
1917 |
T |
|
| Q |
209 |
gaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcctttccaag |
308 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
1916 |
gaccaggttttcataggaaggtctgttgatcatagtgaagtaatccaacatatgttgagcagcaaagtaacctttgatatccattccgttcctttccaag |
1817 |
T |
|
| Q |
309 |
gaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatt |
393 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1816 |
gaaccaaaatctacagtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatt |
1732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 13526966 - 13527366
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||| |||||| |
|
|
| T |
13526966 |
agcatctgcatgctataacaattgtttccaccgtgatggtaatctccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacccat |
13527065 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattcttt---agcgtttcttctgtcgaacacctctgcctttacc |
197 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |||||| | ||| |
|
|
| T |
13527066 |
ttctgttcttgatttccctttgagtcagggattctcctttacaaccctgacttcttcttcttcttcagcgtttcttctgtcgaacacttctgccctgacc |
13527165 |
T |
|
| Q |
198 |
ctgaagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgt |
297 |
Q |
| |
|
| || || ||||| || ||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| || | |
|
|
| T |
13527166 |
cataaatctttgactagattttcataggaatgtctgttaatcatagtgaagtaatccaacatatgttgagcagcaaagtaatccttgatatccatcccat |
13527265 |
T |
|
| Q |
298 |
tcctttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgtt |
397 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||| ||||| |||| ||| |
|
|
| T |
13527266 |
tccttttcaaagaaccaaaatctacggtggcttctacttgaacatccagtttgttcagaggtacagtcaccattctttctttgagaacataagattcgtt |
13527365 |
T |
|
| Q |
398 |
g |
398 |
Q |
| |
|
| |
|
|
| T |
13527366 |
g |
13527366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 23481857 - 23482175
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| | || |||||||| ||||| ||||| || | |||||||| |
|
|
| T |
23481857 |
agcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaacggattcaaacccat |
23481956 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||||||||||||||| || | || |||||||| ||| | | | ||||| ||||| ||| | | | ||||| ||||| |||||| | |||| | |
|
|
| T |
23481957 |
ttccgttcttgatttccctttaagcttaggattctccttcacaagcttaatttcttcttcttcagcatctttcctgtcaaacacttctgccctaacccag |
23482056 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
||||| || ||||| || ||| || |||| || | |||| ||| | | || ||| |||||||||||| ||||| ||||| ||||| || |||| |
|
|
| T |
23482057 |
aagtcttttaccagattcatatacgagggtccattcaacatactgatgaattctgtcatgctttgagcagcaaagtaacccttgatgtccattccattcc |
23482156 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatc |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23482157 |
tttccaaggaaccaaaatc |
23482175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 398
Target Start/End: Complemental strand, 21672800 - 21672663
Alignment:
| Q |
261 |
tgttgagcagcaaaataacctttgatatccataccgttcctttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggta |
360 |
Q |
| |
|
||||||| ||||||||| || ||||||||| || ||||||| ||| |||||||| || | || || ||| ||||||||||||| | ||| ||| |||| |
|
|
| T |
21672800 |
tgttgagaagcaaaataggctaagatatccattccattccttttcaacgaaccaaagtcgatggaggattccacttgaacatccaatctgtccagtggta |
21672701 |
T |
|
| Q |
361 |
tagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
||||| ||||||||||| || ||||| ||||||||| |
|
|
| T |
21672700 |
cagtcacagttctttccttaagaacatatgatttgttg |
21672663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 21673058 - 21672922
Alignment:
| Q |
3 |
catctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccattt |
102 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||| |||||||| |||||||| | || || |||||||| |||||||| ||| | |||||||||| |
|
|
| T |
21673058 |
catctgcatactctagcaatagtttctgcagtgatggtgatctccattcccatcacagcagaccttatttcagtaccattgaacggtttcaaacccattt |
21672959 |
T |
|
| Q |
103 |
cttctcttgatttccctttgagtatggggttctcctt |
139 |
Q |
| |
|
| ||| ||||| ||||| || | ||||||||||| |
|
|
| T |
21672958 |
ccgttctagattttcctttaagcttagggttctcctt |
21672922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0752 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0752
Description:
Target: scaffold0752; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 5692 - 6089
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
||||||||||||| |||| || ||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
5692 |
agcatctgcatgcgctagcgattgtttccactgtgatggtaatttccatacccatcattgttgatctgatttctgttccattgaatggtcttagacccat |
5791 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| ||| ||||||||||||||||| | |||| | |||| | |
|
|
| T |
5792 |
ttctgttcttgatttccctttgagtatgggattctcctttacagccctaacttctttctcttcagcatttcttctgtcgaacacttttgccctgacccag |
5891 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| |||||||| || ||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || || ||||||||||| || |||| |
|
|
| T |
5892 |
aaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatatccattccattcc |
5991 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
|||| |||||||||| ||| || ||||||||||||||||||||||||||||||| || || |||| ||||||||| ||||| ||||| |||| |||| |
|
|
| T |
5992 |
tttctaaggaaccaagatctacagtggcttctacttgaacatccagtttgttcaaagatacggtcaccgttctttctttgagaacatatgattcgttg |
6089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0544 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 6495 - 6098
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
||||| |||||||| |||| || ||||||| ||||||||||| ||||||| |||||||| |||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
6495 |
agcatttgcatgctctagcgattgtttccactgtgatggtaatttccatacacatcactgctgatctgatttctattccgttgaatggtcttagacccat |
6396 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| | | ||||||||||||||||| ||| || | |||| |
|
|
| T |
6395 |
ttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttattctacaacatttcttctgtcgaacacttctaccctgacccaa |
6296 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| |||||||| || ||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || || ||||||||||| || |||| |
|
|
| T |
6295 |
aaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatatccattccattcc |
6196 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
|||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| |||| |||| |
|
|
| T |
6195 |
tttctaaggaaccaagatctacagtggcttctacttgaacatccagtttgttcagaggtacggtcactgttctttctttgagaacatatgattcgttg |
6098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 19309491 - 19309094
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
||||||| |||||| |||| || ||||||| ||||||||||| ||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
19309491 |
agcatctacatgctctagcgattgtttccactgtgatggtaatttccatacacatcactgctgatctgatttctgttccattgaatggtcttagacccat |
19309392 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |||||||||| |||||| ||||||| ||||| ||||||||||||||||||||| |||||| | ||| | |
|
|
| T |
19309391 |
ttctgttcttgatttccctttgagtctgggattctcctttatagccctaacttcttcttcttcagcgtttcttctgtcgaacacttctgccctgacctag |
19309292 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| ||||||| || |||||||| || ||||| || ||||| ||||||||||| ||| | |||||||||||| || || ||||||||||| | ||| |
|
|
| T |
19309291 |
aaatccttgattagattttcataagaaggtctgtttatcatttcgaagtaatccatcatgtattgagcagcaaagtatcccttgatatccatttcattct |
19309192 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
|||||||||||||||| || | | ||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| || || ||||||||| |
|
|
| T |
19309191 |
tttccaaggaaccaaagtctatagaggcttctacttgaacatccagtttgttcagaggtacgatcaccgttctttctttgagaacgtatgatttgttg |
19309094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 24811217 - 24810820
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| | || |||||||| ||||| ||||| ||| ||| | |||| |
|
|
| T |
24811217 |
agcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaacggttttagaaccat |
24811118 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||| ||||||||||||||| | || || ||||| || | | |||||| |||| ||| | | | ||||||||||| |||||| | ||| | |
|
|
| T |
24811117 |
ttccgttctcgatttccctttgagtctaggattttccttcactaacttagcttcttcctcttcagcatctttcctgtcgaacacttctgccctaacctag |
24811018 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| |||||||| || || |||| || ||||| || | ||| | ||||||||| ||| |||||||||||||| ||||| ||||| ||||| || |||| |
|
|
| T |
24811017 |
aaatccttgactagattcacatacgagggtctgtttaacattttaaagtaatccgtcatgtgttgagcagcaaagtaacccttgatgtccattccattcc |
24810918 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
|||||||||||||||| || || | | |||||||| |||||||||| | ||||| |||| || ||||||||| ||||| || || ||||||||| |
|
|
| T |
24810917 |
tttccaaggaaccaaagtctactgctgattctactttaacatccagtctattcagtggtacgaccaccgttctttctttgagaacgtatgatttgttg |
24810820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 50355 - 49958
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| | ||| || ||||| |||||||||||| |||||| |||||| |
|
|
| T |
50355 |
agcatctgcatgctctagcaattgtttccactgtgatggtaatttccatacccatcatcgctgaccttatttctgttccattgaattgtcttagacccat |
50256 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
|||| ||||||||||||||||||| | || |||||||||||| |||| ||||||| ||||| || |||||||||||||||||| |||||| | |||| |
|
|
| T |
50255 |
ttctgttcttgatttccctttgagtctaggattctcctttacaaccctaacttcttcttcttcagtgtttcttctgtcgaacacttctgccctaacccaa |
50156 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
||||||||||| || |||||||| || ||||| || | ||| ||||||||||||| ||| |||||||||||||| || || ||||||||||| || |||| |
|
|
| T |
50155 |
aagtccttgactagattttcataagaaggtctgtttaacattgtgaagtaatccatcatgtgttgagcagcaaagtatcccttgatatccattccattcc |
50056 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
||||||||||| |||||| || | ||||||||||||||||| ||||||||||| || | |||| |||||||| ||||| || || ||||||||| |
|
|
| T |
50055 |
tttccaaggaattaaaatctacagaagcttctacttgaacatctagtttgttcagtggaacggtcactgttctttctttgagaacgtatgatttgttg |
49958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 1290 - 894
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||| || ||||||||||||||| ||| || |||| ||||||||||||||| ||| |||||| |
|
|
| T |
1290 |
agcatctgcatgctctagcaattgtttccactatgatggtgatttccatacccatcactactgaccttatttatgttccattgaatggttttagacccat |
1191 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |||||||||||| |||| ||||||| ||||| ||||||||||||||||||||| || ||| ||||| | |
|
|
| T |
1190 |
ttctgttcttgatttccctttgagtctgggattctcctttacaaccctaacttcttcttcttcagcgtttcttctgtcgaacacttcagcccttacctag |
1091 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
||||||||||| || |||||||| || ||||| || ||||| ||||||||||||| ||| | |||| ||||||| || |||||||||||||| || ||| |
|
|
| T |
1090 |
aagtccttgactagattttcataagagggtctgtttatcattgtgaagtaatccatcatgt-ttgaacagcaaagtatcctttgatatccattccattca |
992 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
||||||||||| |||| || || | | ||||||||||||||||||||||||||| || | |||| ||||||||| ||||| || || ||||||||| |
|
|
| T |
991 |
tttccaaggaatcaaagtctacagaagattctacttgaacatccagtttgttcagtggaacggtcaccgttctttctttgagaacgtatgatttgttg |
894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 108647 - 109042
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| || || |||||||| ||||| ||||| ||||||| |||||| |
|
|
| T |
108647 |
agcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagtagacctgatttctgttcctttgaacggtcttagacccat |
108746 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||||||||||||||||||| | || ||||||||||| | || |||||| ||| | |||| || | ||||||||||| |||||| | |||| | |
|
|
| T |
108747 |
ttccgttcttgatttccctttgagtctaggattctcctttactacgctagcttcttcttcctcagcgattttcctgtcgaacacttctgccctcacccag |
108846 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| || ||||| || || ||||| || |||| || | ||| ||||||||||| ||||| |||||||||||||||||| ||||| ||||| || |||| |
|
|
| T |
108847 |
aaatctttgactagattctcatatgaaagtctgttcaacattacgaagtaatccatcatattttgagcagcaaaataacccttgatgtccattccattcc |
108946 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgt |
396 |
Q |
| |
|
||||||||||||||||||| || | ||||| ||||||||||||||| ||||||| || | ||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
108947 |
tttccaaggaaccaaaatctacagcagcttcgacttgaacatccagtctgttcagtggaacagtcaccgttctttccttgagaacatatgatttgt |
109042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 12886 - 13237
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
||||||||||||||||||| || ||||| | |||||||||||||||||||||||||| | || |||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
12886 |
agcatctgcatgctttagcgattgtttcgactgtgatggtaatctccatacccatcacagcagacctgatttctgttccattggatggtcttagacccat |
12985 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||||||||||||||||||| | || |||||||||||| |||| |||||| ||| | ||||||||| ||||||||||| || ||| |||||| | |
|
|
| T |
12986 |
ttccgttcttgatttccctttgagtctaggattctcctttacaaccctagcttcttcttcctcagcgtttctcctgtcgaacacttcagcccttacccag |
13085 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| || ||||| || || ||||| || ||||| || | ||| | ||||||||||| ||| | ||||||||||||||||| ||||| ||||| || |||| |
|
|
| T |
13086 |
aaatctttgactagattctcataagaaggtctgtttaacattgcgaagtaatccatcatgttctgagcagcaaaataacccttgatgtccatgccattcc |
13185 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgtt |
352 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||||||||||||||| |||| |
|
|
| T |
13186 |
tttccaaggaaccaaaatctacagttgcttcgacttgaacatccagtctgtt |
13237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 13181278 - 13180881
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||||||||||||| | || |||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
13181278 |
agcatctgcatgctttagcaattatttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaatggttttaaacccat |
13181179 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||||||||||||||||||| | || || |||||||| ||| | |||| |||| ||||| | | || |||||||| |||||| | |||| | |
|
|
| T |
13181178 |
ttccgttcttgatttccctttgagtctaggattttcctttactaacctagcctcttcctcttcagcgtctttcctatcgaacacttctgccctaacccag |
13181079 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| || ||||| || || ||||| || ||||| || | |||| | || || |||| ||| |||||||||||||| ||||| ||||| ||||| || |||| |
|
|
| T |
13181078 |
aaatctttgacaagattctcatacgaaggtctgttcaacatattaaaatagtccatcatgtgttgagcagcaaagtaacccttgatgtccattccattcc |
13180979 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
||||||||||||||||||| || | ||||| ||||||||||||||| ||| ||| || | |||||||||||||||||||| || || ||||||||| |
|
|
| T |
13180978 |
tttccaaggaaccaaaatctactgctgcttcgacttgaacatccagtctgtccagtggaacggtcatcgttctttccttgagaacgtatgatttgttg |
13180881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 162084 - 161687
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||| | |||||| ||||||||||||||||||| || |||||||| ||||| ||| | ||| ||| |||||| |
|
|
| T |
162084 |
agcatctgcaagctttagcaattgtttctactgtgatgataatctccatacccatcacaacagacctgatttctgttcctttgcacggttttagacccat |
161985 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||||||||||||||||||| | || || ||||||| ||| |||||| |||| ||||| | | ||||||||||| |||||| | |||| | |
|
|
| T |
161984 |
ttccgttcttgatttccctttgagtctaggattttcctttattaacctagcttcttcctcttcagcgtctttcctgtcgaacacttctgccctaacccag |
161885 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| |||||||| || || ||||| || ||||| || | ||| ||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || |||| |
|
|
| T |
161884 |
aaatccttgactagattctcatacgaaggtctattcaacattccgaagtaatccatcatgtgttgagcagcaaagtaacccttgatgtccattccattcc |
161785 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
||| |||||||||||| || || | ||||||||||||||||||||| ||||||| || || |||| ||||||||| ||||| || || ||||||||| |
|
|
| T |
161784 |
ttttcaaggaaccaaagtctactgcagcttctacttgaacatccagtctgttcagtggaatggtcaccgttctttctttgagaacgtatgatttgttg |
161687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 13142892 - 13143289
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||| | |||||| ||||||||||||||||||| || |||||||| ||||| ||| | ||| ||| |||||| |
|
|
| T |
13142892 |
agcatctgcaagctttagcaattgtttctactgtgatgataatctccatacccatcacaacagacctgatttctgttcctttgcacggttttagacccat |
13142991 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||||||||||||||||||| | || || ||||||| ||| |||||| |||| ||||| | | ||||||||||| |||||| | |||| | |
|
|
| T |
13142992 |
ttccgttcttgatttccctttgagtctaggattttcctttattaacctagcttcttcctcttcagcgtctttcctgtcgaacacttctgccctaacccag |
13143091 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| |||||||| || || ||||| || ||||| || | ||| ||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || |||| |
|
|
| T |
13143092 |
aaatccttgactagattctcatacgaaggtctattcaacattccgaagtaatccatcatgtgttgagcagcaaagtaacccttgatgtccattccattcc |
13143191 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
||| |||||||||||| || || | ||||||||||||||||||||| ||||||| || || |||| ||||||||| ||||| || || ||||||||| |
|
|
| T |
13143192 |
ttttcaaggaaccaaagtctactgcagcttctacttgaacatccagtctgttcagtggaatggtcaccgttctttctttgagaacgtatgatttgttg |
13143289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 398
Target Start/End: Complemental strand, 15657390 - 15657276
Alignment:
| Q |
284 |
gatatccataccgttcctttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagc |
383 |
Q |
| |
|
||||||||| || ||||||| |||||||||||| || | || || ||| ||||||||||||| | ||| ||| |||| ||||| ||||||||||| || |
|
|
| T |
15657390 |
gatatccattccattccttttcaaggaaccaaagtctatggaggattccacttgaacatccaatatgtccagtggtacagtcacagttctttccttaaga |
15657291 |
T |
|
| Q |
384 |
acataggatttgttg |
398 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
15657290 |
acatatgatttgttg |
15657276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 15837009 - 15837127
Alignment:
| Q |
7 |
tgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccatttcttc |
106 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||| |||||||||||||| | || || || || || |||||||||||| | | ||||||||| |
|
|
| T |
15837009 |
tgcatgctttagcaattgtttctacagtgatggtaatttccatacccatcacagcagaccttatctccgtaccattgaatggtttaagacccatttcagt |
15837108 |
T |
|
| Q |
107 |
tcttgatttccctttgagt |
125 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15837109 |
ccttgatttccctttgagt |
15837127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 3161 - 2764
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| | || |||||||| ||||| ||||| ||| ||| | |||| |
|
|
| T |
3161 |
agcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaacggttttagaaccat |
3062 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| ||| ||||||||||||||| | || || ||||| || | | |||||| |||| ||| | | | ||||||||||| |||||| | ||| | |
|
|
| T |
3061 |
ttccgttctcgatttccctttgagtctaggattttccttcactaacttagcttcttcctcttcagcatctttcctgtcgaacacttctgccctaacctag |
2962 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|| |||||||| || || |||| || ||||| || | ||| | ||||||||| ||| |||||||||||||| ||||| ||||| ||||| || |||| |
|
|
| T |
2961 |
aaatccttgactagattcacatacgagggtctgtttaacattttaaagtaatccgtcatgtgttgagcagcaaagtaacccttgatgtccattccattcc |
2862 |
T |
|
| Q |
301 |
tttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
|||||||||||||||| || || | | |||||||| |||||||||| | ||||| |||| || ||||||||| ||||| || || ||||||||| |
|
|
| T |
2861 |
tttccaaggaaccaaagtctactgctgattctactttaacatccagtctattcagtggtacgaccaccgttctttctttgagaacgtatgatttgttg |
2764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 398
Target Start/End: Original strand, 73584 - 73721
Alignment:
| Q |
261 |
tgttgagcagcaaaataacctttgatatccataccgttcctttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggta |
360 |
Q |
| |
|
||||||| |||||||||| || ||||||||| || ||||||| ||| |||||||| || | | || ||| ||||||||||||| | ||| ||| |||| |
|
|
| T |
73584 |
tgttgagaagcaaaataagctaagatatccattccattccttttcaaagaaccaaagtcgattgaggattccacttgaacatccaatctgtccagtggta |
73683 |
T |
|
| Q |
361 |
tagtcatcgttctttccttgagcacataggatttgttg |
398 |
Q |
| |
|
|||||| ||||||||||| || ||||| ||||||||| |
|
|
| T |
73684 |
cagtcatagttctttccttaagaacatatgatttgttg |
73721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 6997 - 6682
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| || || ||||||||||| | |||||| | | |||||| |
|
|
| T |
6997 |
agcatctgcatgctttagcaattgtttcttcagtgatggtgatctccatacccatcacttcagacctaatttcagttcctcttaatggtttaagacccat |
6898 |
T |
|
| Q |
101 |
ttcttctcttgatttccctttgagtatggggttctcctttacagccctgacttcttattctttagcgtttcttctgtcgaacacctctgcctttaccctg |
200 |
Q |
| |
|
||| || ||||||||||||| | | || || |||||||| | | || ||| |||| ||||| | | ||||| ||||| |||||| | ||| | |
|
|
| T |
6897 |
ttcagtcctcgatttccctttgaatcttggattttcctttaccagcttagctacttcctcttcagcgtctttcctgtcaaacacttctgccctaacctag |
6798 |
T |
|
| Q |
201 |
aagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccataccgttcc |
300 |
Q |
| |
|
|||||||| ||||| ||| || || ||||| || | ||| ||||||||| | ||||||||||| |||||| ||||| |||||||| || || || | |
|
|
| T |
6797 |
aagtcctttaccagatttatgtatgaaggtctgtttaacatttcgaagtaatcaaccatatgttgagtagcaaagtaacccttgatatcaattccatttc |
6698 |
T |
|
| Q |
301 |
tttccaaggaaccaaa |
316 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
6697 |
tttccaaggaatcaaa |
6682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0547 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0547
Description:
Target: scaffold0547; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 4403 - 4542
Alignment:
| Q |
3 |
catctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccattt |
102 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||| |||||||| |||||||| | ||||| |||||||| || ||||| ||| | || ||||||| |
|
|
| T |
4403 |
catctgcatactctagcaatagtttctgcagtgatggtgatctccattcccatcacagcagatcttatttcagtacccttgaacggtttcaatcccattt |
4502 |
T |
|
| Q |
103 |
cttctcttgatttccctttgagtatggggttctcctttac |
142 |
Q |
| |
|
| ||||||||| ||||| || | |||||||||||||| |
|
|
| T |
4503 |
ccattcttgattttcctttaagcttcgggttctcctttac |
4542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 16815856 - 16815717
Alignment:
| Q |
3 |
catctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccattt |
102 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||| |||||||| |||||||| | ||||| |||||||| || ||||| ||| | || ||||||| |
|
|
| T |
16815856 |
catctgcatactctagcaatagtttctgcagtgatggtgatctccattcccatcacagcagatcttatttcagtacccttgaacggtttcaatcccattt |
16815757 |
T |
|
| Q |
103 |
cttctcttgatttccctttgagtatggggttctcctttac |
142 |
Q |
| |
|
| ||||||||| ||||| || | |||||||||||||| |
|
|
| T |
16815756 |
ccattcttgattttcctttaagcttcgggttctcctttac |
16815717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0269
Description:
Target: scaffold0269; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 10727 - 10829
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccat |
100 |
Q |
| |
|
|||||||||||||| |||| || |||||| |||||||| ||||||||||||||||||| ||| ||||| | ||| || |||| ||||| | |||||| |
|
|
| T |
10727 |
agcatctgcatgctctagctattgtttcctgagtgatggtgatctccatacccatcactgctgacctgatcttagtgcctctgaacggtctgagacccat |
10826 |
T |
|
| Q |
101 |
ttc |
103 |
Q |
| |
|
||| |
|
|
| T |
10827 |
ttc |
10829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 10983 - 11042
Alignment:
| Q |
257 |
catatgttgagcagcaaaataacctttgatatccataccgttcctttccaaggaaccaaa |
316 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| | || |||||||||||||| ||||| |
|
|
| T |
10983 |
catatgttgagcagaaaaataccctttgatatctactccattcctttccaaggacccaaa |
11042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0739 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0739
Description:
Target: scaffold0739; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 5765 - 5866
Alignment:
| Q |
2 |
gcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctgatttcagttccattgaatggtcttaaacccatt |
101 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| |||||||| ||||| || | || || |||||||| |||||||| ||||| ||||||||| |
|
|
| T |
5765 |
gcatctgcatactttagcaatagtttctgcattgatggtgatctccattcccattacagcagaccttatttcagtaccattgaacggtctcaaacccatt |
5864 |
T |
|
| Q |
102 |
tc |
103 |
Q |
| |
|
|| |
|
|
| T |
5865 |
tc |
5866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0739; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 398
Target Start/End: Original strand, 6051 - 6161
Alignment:
| Q |
288 |
tccataccgttcctttccaaggaaccaaaatcaacggtggcttctacttgaacatccagtttgttcagaggtatagtcatcgttctttccttgagcacat |
387 |
Q |
| |
|
||||| || ||||||| || |||||||| |||| | || ||| ||||||||||||| | ||| ||| |||| |||||| ||||||||||| || |||| |
|
|
| T |
6051 |
tccatcccattcctttttaaagaaccaaagtcaatagaggattccacttgaacatccaatctgtccagtggtacagtcatagttctttccttaagaacat |
6150 |
T |
|
| Q |
388 |
aggatttgttg |
398 |
Q |
| |
|
| ||||||||| |
|
|
| T |
6151 |
atgatttgttg |
6161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0207 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0207
Description:
Target: scaffold0207; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 24191 - 24248
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
58 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||| |
|
|
| T |
24191 |
agcatctgcatgctttagcaattgtttctacaatgatgataatctccatacccatcac |
24248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 2735 - 2767
Alignment:
| Q |
93 |
aaacccatttcttctcttgatttccctttgagt |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2735 |
aaacccatttcttctcttgatttccctttgagt |
2767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0297 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0297
Description:
Target: scaffold0297; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 20571 - 20715
Alignment:
| Q |
172 |
ttctgtcgaacacctctgcctttaccctgaagtccttgaccaggttttcataggacggtctcttgatcatagtgaagtaatccaacatatgttgagcagc |
271 |
Q |
| |
|
||||||||||||| |||||| | | || ||||||||| ||||| || ||| || ||||| || | ||| ||||||||| | ||| |||| |||||| |
|
|
| T |
20571 |
ttctgtcgaacacttctgccctaatccagaagtcctttaccagattcatatacgatggtctgttcaacatttcgaagtaatcaaccatctgttaagcagc |
20670 |
T |
|
| Q |
272 |
aaaataacctttgatatccataccgttcctttccaaggaaccaaa |
316 |
Q |
| |
|
||| ||||| |||||||| || || ||||||||||||||| |||| |
|
|
| T |
20671 |
aaagtaacccttgatatctattccattcctttccaaggaatcaaa |
20715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21630 - 21573
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
58 |
Q |
| |
|
|||||| ||||||||||||||| ||||| | |||||||||| |||||||||||||| |
|
|
| T |
21630 |
agcatccgcatgctttagcaattgtttctacagtgatggtaaggtccatacccatcac |
21573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34831 - 34774
Alignment:
| Q |
1 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
58 |
Q |
| |
|
|||||| ||||||||||||||| ||||| | |||||||||| |||||||||||||| |
|
|
| T |
34831 |
agcatccgcatgctttagcaattgtttctacagtgatggtaaggtccatacccatcac |
34774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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