View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7231_low_6 (Length: 374)

Name: NF7231_low_6
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7231_low_6
NF7231_low_6
[»] chr2 (20 HSPs)
chr2 (1-354)||(39602224-39602577)
chr2 (109-356)||(39450730-39450977)
chr2 (23-356)||(39220393-39220726)
chr2 (6-324)||(39199012-39199330)
chr2 (146-304)||(39381883-39382041)
chr2 (169-312)||(39369526-39369669)
chr2 (1-271)||(39391338-39391608)
chr2 (19-277)||(39398691-39398952)
chr2 (131-356)||(44895991-44896207)
chr2 (20-277)||(39161214-39161471)
chr2 (20-277)||(39207723-39207980)
chr2 (55-277)||(39478896-39479118)
chr2 (182-326)||(39495249-39495393)
chr2 (131-326)||(39129705-39129900)
chr2 (19-277)||(39467279-39467540)
chr2 (1-70)||(39450974-39451043)
chr2 (31-114)||(39381798-39381881)
chr2 (201-326)||(39123744-39123869)
chr2 (182-251)||(39427412-39427481)
chr2 (320-356)||(39215156-39215192)
[»] chr6 (2 HSPs)
chr6 (23-277)||(16112599-16112853)
chr6 (238-270)||(16112564-16112596)
[»] chr5 (1 HSPs)
chr5 (21-277)||(33559747-33560003)
[»] chr3 (1 HSPs)
chr3 (14-78)||(51574403-51574467)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 39602577 - 39602224
Alignment:
Q  1 ctccacccgttcatcacattgcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacga 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39602577 ctccacctgttcatcacattgcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacga 39602478  T
Q  101 ccattctccttttctgatgttagctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39602477 ccattctccttttctgatgttagctttagcaacttcttccttttggactctaatttttctgcttgcccaccaattaatctgttcattgcatcaagctcta 39602378  T
Q  201 tctctttggccttaagttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtctttatcaatgttatcaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39602377 tctctttggccttaagttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtccttatcaatgttatcaat 39602278  T
Q  301 gactcgacgaagttctatttcttttgaaatgttgcccttgacttgattaagttc 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39602277 gactcgacgaagttctatttcttttgaaatgttgcccttgacttgattaagttc 39602224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 109 - 356
Target Start/End: Complemental strand, 39450977 - 39450730
Alignment:
Q  109 cttttctgatgttagctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttg 208  Q
    |||||| || |||| ||| |||||||| ||| |||  |||||||||||||| |||||  | ||||||| | |||||| ||||||||| ||||||||||||    
T  39450977 cttttcggaggttaccttcagcaacttgttcttttcagactctaatttttcagcttgtttgccaattagtttgttcaatgcatcaagttctatctctttg 39450878  T
Q  209 gccttaagttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtctttatcaatgttatcaatgactcgac 308  Q
    ||||||  ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||    
T  39450877 gccttacatttaaaagtaaattcagcatttttttgggaaagagccttgagttcctcttccttcctttcacggtccttatcaatgttaacaatgacttgac 39450778  T
Q  309 gaagttctatttcttttgaaatgttgcccttgacttgattaagttcta 356  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39450777 gaagttctatttcttttgaaatgttccccttgacttgattaagttcta 39450730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 23 - 356
Target Start/End: Complemental strand, 39220726 - 39220393
Alignment:
Q  23 ttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacgaccattctccttttctgatgtta 122  Q
    ||||||||||||||||||||||| | | || | |||| | ||||||   ||||||| |||||||| || ||||||  || ||||| | |||||||| |||    
T  39220726 ttctcttttgactcaagttccttaaaccgatcatcaaatcgcttctgctttgactcaaattccttcatctgagcaatactattcttcatttctgatatta 39220627  T
Q  123 gctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaa 222  Q
      |||     |||||||||||  || ||||| |||||||||||   |||||||||| |||||| ||||||||||||  ||||||||||||||   |||||    
T  39220626 tatttcttgccttcttcctttcagattctaacttttctgcttgttcaccaattaatttgttcactgcatcaagctcgttctctttggccttacagtccaa 39220527  T
Q  223 agtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtctttatcaatgttatcaatgactcgacgaagttctatttct 322  Q
    || || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  39220526 agcaagttcagcaattttttgggaaagagccttgatttcctcttccttcctttcatggtccttatcaatgttatcaatgacttgacgaagttctatttct 39220427  T
Q  323 tttgaaatgttgcccttgacttgattaagttcta 356  Q
    ||||||||||| ||||||||||||| ||||||||    
T  39220426 tttgaaatgttacccttgacttgatcaagttcta 39220393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 39199012 - 39199330
Alignment:
Q  6 cccgttcatcacattgcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacgaccatt 105  Q
    ||||||| ||||| ||||||||||||||||| | |||||| ||| || | |||| | ||||||   |||| || |||||||| | |||||||  || |||    
T  39199012 cccgttcttcacactgcttctcttttgactcgatttccttaacccgatcatcaaatcgcttctgctttgattcaaattccttcacttgagcaatactatt 39199111  T
Q  106 ctccttttctgatgttagctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctct 205  Q
    || | |||||||| |||  ||||||  ||||||||||   || ||||| ||||| || ||   |||||||||| |||||| |||| |||||||| ||| |    
T  39199112 cttcatttctgatattatatttagcgccttcttccttccagattctaacttttccgcctgttcaccaattaatttgttcactgcaccaagctctttctgt 39199211  T
Q  206 ttggccttaagttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtctttatcaatgttatcaatgactc 305  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  39199212 ttggccttatattccaaagtaaattcagcaatttgttgggaaagagccttgagttcctcttccttcctttcacggtccttatcaatgttatcaatgactt 39199311  T
Q  306 gacgaagttctatttcttt 324  Q
    ||  ||||||||| |||||    
T  39199312 gattaagttctatctcttt 39199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 146 - 304
Target Start/End: Original strand, 39381883 - 39382041
Alignment:
Q  146 gactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaaagtaaattcagcaattttttggg 245  Q
    |||||||||||||| |||||  | ||||||||  ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  39381883 gactctaatttttccgcttgtgtgccaattaacttgttcattgtatcaagctctatctctttggccttaagttccaaaataaattcagcaatttgttggg 39381982  T
Q  246 aaagagccttgagttcctcttccttcctttcacggtctttatcaatgttatcaatgact 304  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39381983 aaagagccttgagttcctcttccttcctttcacggtccttatcaatgttatcaatgact 39382041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 39369669 - 39369526
Alignment:
Q  169 accaattaatctgttcattgcatcaagctctatctctttggccttaagttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttcc 268  Q
    |||||||||  | |||| ||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  39369669 accaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctcttcc 39369570  T
Q  269 ttcctttcacggtctttatcaatgttatcaatgactcgacgaag 312  Q
    ||||||||| || | ||||||||||||||||||||| |||||||    
T  39369569 ttcctttcatggaccttatcaatgttatcaatgacttgacgaag 39369526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 39391338 - 39391608
Alignment:
Q  1 ctccacccgttcatcacattgcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacga 100  Q
    |||||| ||| | ||||| |||||||||||||||||||||||||| ||| | |||| || ||||||||   ||||||| || ||||| ||| ||||||      
T  39391338 ctccactcgtccttcacactgcttctcttttgactcaagttccttaacccggcctttaaattgcttctgctttgactcaaagtccttcattagagcacag 39391437  T
Q  101 ccattctccttttctgatgttagctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctcta 200  Q
    | ||||| | |||||||| |||  |||| | | |||||| || | |||||||||||||||||||    |||||||||| ||||  |||||||||| |||     
T  39391438 ctattcttcatttctgatattatatttatcgatttcttctttgtagactctaatttttctgcttcttcaccaattaatttgtttgttgcatcaagatctt 39391537  T
Q  201 tctctttggccttaagttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttc 271  Q
    |||||||||||| |||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  39391538 tctctttggcctgaagttccacagtacattcaacaattttttgggaaagagccttcagttcctcttccttc 39391608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 39398691 - 39398952
Alignment:
Q  19 ttgcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacg---accattctccttttct 115  Q
    ||||||||||||||||||||||||||| |||||||||||||    |||||| ||||||||||| || |  |||||||||||   | |||||| | |   |    
T  39398691 ttgcttctcttttgactcaagttccttaacctgaccttcaaaacacttcttcattgactcgaagtcttccatttgagcacgtggatcattctgcctgatt 39398790  T
Q  116 gatgttagctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaa 215  Q
    ||  ||| |||||| |||||||||||||  ||||||||  |||||||||| |  | || |||| | |||||||||||||||||| ||||||||| ||  |    
T  39398791 gacattacctttagtaacttcttcctttccgactctaaaatttctgcttgtccgctaactaatattttcattgcatcaagctctttctctttggactcta 39398890  T
Q  216 gttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttca 277  Q
    |||||| | || |||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  39398891 gttccatattacattcggcaactttttgggcaagagccttgagttcctcttccttcctttca 39398952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 356
Target Start/End: Original strand, 44895991 - 44896207
Alignment:
Q  131 aacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaaagtaaatt 230  Q
    |||||||||||||  |||| ||| ||| |||||||| | |||| | || | | ||| |||||||| ||| ||||||||||||||||||||| |||| |||    
T  44895991 aacttcttcctttccgactgtaactttgctgcttgcatgccaactgatttctccatagcatcaaggtctttctctttggccttaagttccatagtacatt 44896090  T
Q  231 cagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtctttatcaatgttatcaatgactcgacgaagttctatttcttttgaaat 330  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||| ||          |||||||||||| ||| | |||| |||||||| |||||    
T  44896091 catcaattttttgggaaagagccttgagttgctcttccttcctttcacgatc---------cttatcaatgacttgacaacgttcaatttctttagaaat 44896181  T
Q  331 gttgcccttgacttgattaagttcta 356  Q
    ||| ||||| ||||||||||||||||    
T  44896182 gttaccctttacttgattaagttcta 44896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 39161471 - 39161214
Alignment:
Q  20 tgcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacgaccattctccttttctgatg 119  Q
    |||||||||||||||||||||||||| ||| |  ||| || ||||||||   ||||||| |||||||| ||| ||||||  | ||||| | ||||||||     
T  39161471 tgcttctcttttgactcaagttccttaacccggactttaaattgcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgata 39161372  T
Q  120 ttagctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaagttc 219  Q
    |||  ||||   ||||||||||| | ||||||||| |||||| ||    || ||||||| |||||| ||||||||| |||  |||||||| ||||||| |    
T  39161371 ttatatttattgacttcttccttgttgactctaatatttctgtttcttcactaattaatttgttcactgcatcaagatcttcctctttggtcttaagtac 39161272  T
Q  220 caaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttca 277  Q
    ||||||| |||||| || |||| ||||||||| | ||||||||||||||||| |||||    
T  39161271 caaagtacattcagtaacttttagggaaagagtcctgagttcctcttccttcatttca 39161214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 39207723 - 39207980
Alignment:
Q  20 tgcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacgaccattctccttttctgatg 119  Q
    |||||||||||||||||||||||||| ||| |  ||| || ||||||||   ||||||| |||||||| ||| ||||||  | ||||| | ||||||||     
T  39207723 tgcttctcttttgactcaagttccttaacccggactttaaattgcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgata 39207822  T
Q  120 ttagctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaagttc 219  Q
    |||  ||||   ||||||||||| | ||||||||| |||||| ||    || ||||||| |||||| ||||||||| |||  |||||||| ||||||| |    
T  39207823 ttatatttattgacttcttccttgttgactctaatatttctgtttcttcactaattaatttgttcactgcatcaagatcttcctctttggtcttaagtac 39207922  T
Q  220 caaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttca 277  Q
    ||||||| |||||| || |||| ||||||||| | ||||||||||||||||| |||||    
T  39207923 caaagtacattcagtaacttttagggaaagagtcctgagttcctcttccttcatttca 39207980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 55 - 277
Target Start/End: Original strand, 39478896 - 39479118
Alignment:
Q  55 ttcaagttgcttctttattgactcgaattcctttatttgagcacgaccattctccttttctgatgttagctttagcaacttcttccttttggactctaat 154  Q
    ||||||| ||||||| |||||||| || ||| | |||||| || || |||||| | || ||||| ||| |||||| | |||||||||||  |||||||||    
T  39478896 ttcaagtcgcttcttcattgactcaaaatccctgatttgaacatgatcattctgccttactgatattacctttagtaccttcttcctttaagactctaat 39478995  T
Q  155 ttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaaagtaaattcagcaattttttgggaaagagcct 254  Q
     |||||||||| |  | |||| || | ||||||||||||||||||  ||| |||| ||||||||||| | || |||||| || ||| | || ||||||||    
T  39478996 atttctgcttgtccgctaattgatattttcattgcatcaagctcttgctcgttggtcttaagttccagattacattcagaaactttctcggtaagagcct 39479095  T
Q  255 tgagttcctcttccttcctttca 277  Q
    |||||||||||||||||||||||    
T  39479096 tgagttcctcttccttcctttca 39479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 182 - 326
Target Start/End: Original strand, 39495249 - 39495393
Alignment:
Q  182 ttcattgcatcaagctctatctctttggccttaagttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttcacggt 281  Q
    ||||||| ||||  |||| ||||||||||||||||||||| || | ||| ||||||||||||||||||||| |||||||||| |||||||| ||||| |     
T  39495249 ttcattgtatcacactctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttccttcccttcacaga 39495348  T
Q  282 ctttatcaatgttatcaatgactcgacgaagttctatttcttttg 326  Q
    | ||||||  |||||| |||||| ||||||||||| |||||||||    
T  39495349 ccttatcaccgttatccatgactggacgaagttctgtttcttttg 39495393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 326
Target Start/End: Complemental strand, 39129900 - 39129705
Alignment:
Q  131 aacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaaagtaaatt 230  Q
    |||||||||||||  ||||||| | |||||||||| ||  |||||||| | |||||||||||| ||||| ||||||||  ||| ||||||| |||| | |    
T  39129900 aacttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacact 39129801  T
Q  231 cagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtctttatcaatgttatcaatgactcgacgaagttctatttcttttg 326  Q
     |||||| |||||||||||| |||||||||||| || ||||||||||  |   |||||||||||||| |||| | ||||||||| | |||||||||    
T  39129800 gagcaatattttgggaaagatccttgagttcctgtttcttcctttcatagatattatcaatgttatccatgagtggacgaagttttgtttcttttg 39129705  T

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Target: chr2; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 39467540 - 39467279
Alignment:
Q  19 ttgcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacg---accattctccttttct 115  Q
    |||||||| ||||||||||||||||||||||||| |||||| | |||||||  ||||| | || || || ||| ||||| |   | ||||||   |   |    
T  39467540 ttgcttctgttttgactcaagttccttgacctgatcttcaaatcgcttcttctttgacgcaaagtctttcattcgagcatgtggatcattctgtctgatt 39467441  T
Q  116 gatgttagctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaa 215  Q
    ||| ||| |||||| ||||||||||||| |||||||||| |||||||||| || | ||  | | | ||||||| |||||||||| ||||||||| || ||    
T  39467440 gatattacctttagtaacttcttcctttcggactctaatatttctgcttgtctgctaaccagtattttcattgaatcaagctctttctctttggactcaa 39467341  T
Q  216 gttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttca 277  Q
    |||||| | || ||| ||||| |||||| | ||||||||||||| |||||||||| ||||||    
T  39467340 gttccatattacatttagcaactttttgagtaagagccttgagtccctcttccttactttca 39467279  T

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Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39451043 - 39450974
Alignment:
Q  1 ctccacccgttcatcacattgcttctcttttgactcaagttccttgacctgaccttcaagttgcttcttt 70  Q
    ||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  39451043 ctccagccgtccttcacattgcttctcttttgactcaagttccttaacctgaccttcaagtcgcttcttt 39450974  T

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Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 39381798 - 39381881
Alignment:
Q  31 tgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacgaccattctccttttc 114  Q
    |||||||||||  || |||||||  |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||    
T  39381798 tgactcaagtttattaacctgacactcaagttgcttcttcattgactccaattcctttatttgagcacaatcattctccttttc 39381881  T

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Target: chr2; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 39123869 - 39123744
Alignment:
Q  201 tctctttggccttaagttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtctttatcaatgttatcaat 300  Q
    ||||||||| |||||||||||||||| |||||||| || | | ||||| |||||||||||||   ||| ||| || |||| | |||||||||||||| ||    
T  39123869 tctctttggtcttaagttccaaagtacattcagcagttctgttggaaaaagccttgagttcccactccatccctttacggaccttatcaatgttatccat 39123770  T
Q  301 gactcgacgaagttctatttcttttg 326  Q
    || | ||| ||||||| |||||||||    
T  39123769 gatttgacaaagttctgtttcttttg 39123744  T

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Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 39427412 - 39427481
Alignment:
Q  182 ttcattgcatcaagctctatctctttggccttaagttccaaagtaaattcagcaattttttgggaaagag 251  Q
    ||||| |||||| ||||| ||||||| | ||||||||||| |||| |||||||||||||| |||||||||    
T  39427412 ttcatcgcatcacgctctttctctttagtcttaagttccacagtacattcagcaatttttcgggaaagag 39427481  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 39215192 - 39215156
Alignment:
Q  320 tcttttgaaatgttgcccttgacttgattaagttcta 356  Q
    |||||||||||||| || |||||||||||||||||||    
T  39215192 tcttttgaaatgttaccattgacttgattaagttcta 39215156  T

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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 16112853 - 16112599
Alignment:
Q  23 ttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacgaccattctccttttctgatgtta 122  Q
    |||||||||||||| |||||||| || |||  ||||||| |||| ||  |||| || |  ||| | |||||||||||| |||||| | || ||||| |||    
T  16112853 ttctcttttgactcgagttccttaacatgattttcaagtcgctttttctttgaatcaacatccctcatttgagcacgatcattctgcattactgatatta 16112754  T
Q  123 gctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaa 222  Q
     |||||| |||| |||||||| |||||||||| |||| ||||| |  | |||| || | |||||||||||||||||| |||| |||| |||||||||||     
T  16112753 cctttagtaactgcttcctttcggactctaatatttccgcttgtccgctaattgatattttcattgcatcaagctctttctccttggacttaagttccag 16112654  T
Q  223 agtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttca 277  Q
    | ||  ||| |||| |||||||  |||||||||||||||||||| ||| ||||||    
T  16112653 attaccttccgcaactttttggttaagagccttgagttcctctttcttgctttca 16112599  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 16112596 - 16112564
Alignment:
Q  238 tttttgggaaagagccttgagttcctcttcctt 270  Q
    |||||||| ||||||||||||||||||||||||    
T  16112596 tttttgggtaagagccttgagttcctcttcctt 16112564  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 33560003 - 33559747
Alignment:
Q  21 gcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcacgaccattctccttttctgatgt 120  Q
    ||||||||||||||||||||||||| |||  ||||| || ||||||||   ||||||| |||||||| ||| ||||||  | ||||| | |||||||| |    
T  33560003 gcttctcttttgactcaagttccttaacccaacctttaaattgcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgatat 33559904  T
Q  121 tagctttagcaacttcttccttttggactctaatttttctgcttgcctaccaattaatctgttcattgcatcaagctctatctctttggccttaagttcc 220  Q
    ||  |  | | | |||||| ||   ||||||||||| || ||||    ||||| |||| ||||||| |||||||| ||| |||||||| ||| |||||||    
T  33559903 tatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatttgttcatcgcatcaagatctttctctttgacctgaagttcc 33559804  T
Q  221 aaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttca 277  Q
    | |||| |||||||||  ||||||||||||||| |||||||||||||| || |||||    
T  33559803 acagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttca 33559747  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 51574467 - 51574403
Alignment:
Q  14 tcacattgcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactc 78  Q
    ||||||||||||||||| || ||||| ||| | ||| || |||||| ||||||||| ||||||||    
T  51574467 tcacattgcttctctttggaatcaagctccgtaacccgatcttcaaattgcttcttcattgactc 51574403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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