View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7231_low_7 (Length: 342)
Name: NF7231_low_7
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 38585626 - 38585317
Alignment:
| Q |
15 |
tgtgcattgtaacgaggactagtcgttagttaacggtgcagagaatcatctattcccttttcgcgccaattcactcaccaaccaaatatgcgtgaccaag |
114 |
Q |
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| T |
38585626 |
tgtgcatcgtaacgaggaccagtcgttagttaacggtgcagagaatcatctattcccttttcgcgccaattcactcaccaaccaaatatgcgtgaccaag |
38585527 |
T |
|
| Q |
115 |
caagtagctaaccatcgtcaaatcaaacggcatatttaattttcaaatttaaaaagtaaacagtatctgaataaactttcagcaccgtaacggaagcagt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38585526 |
caagtagctaaccatcgtcaaatcaaacggcatatttaactttcaaatttaaaaatttaacagtatctaaataaactttcagcaccgtaacggaagcagt |
38585427 |
T |
|
| Q |
215 |
tccagcgcgtgtagtggtgcatctttgtgatcacccttcactcttcttcagcctataaatatcaaacacaccttagctcacacttttcattctctcccgc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38585426 |
tccagcgcgtgtagtggtgcatctttgtgatcacccttcact---cttcagcctataaatatcacacacaccttagctcacacttttcattctctcccgc |
38585330 |
T |
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| Q |
315 |
cacattacttttt |
327 |
Q |
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||||||||||||| |
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| T |
38585329 |
cacattacttttt |
38585317 |
T |
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