View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7231_low_9 (Length: 328)
Name: NF7231_low_9
Description: NF7231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7231_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 37044357 - 37044064
Alignment:
| Q |
19 |
aagatgaaaaagtaagtgagagatagagatagagcggtgtcacatatggtgtcaaactcgtgttctctcgaatgatttgtccttaactagaacccgttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37044357 |
aagatgaaaaagtaagtgagagatagagatagagcggtgtcacatatggtgtcaaactcgtgttctctcgaatgatttgtccttaactagaacccgttaa |
37044258 |
T |
|
| Q |
119 |
ctacctaagcacaatcgattgcttaaattacaaaatgcttgagttattatatgaggatagtattagtattaatagttgattgctatatgatactagaaaa |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37044257 |
ctacctaagcacaatcaattgcttaaattacaaaatgcttgagttattatatgaggatagtattagtattaatagttgattactatatgatactagaaaa |
37044158 |
T |
|
| Q |
219 |
ctcactattttgtatctttactagcaaaattagctgagaatatactaatacaacaatttggaagttcaaagaagtttgtgaaatcagcaacaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37044157 |
ctcactattttgtatctttactagcaaaattagctgagaatatactaatacaacaatttggaagttcaaagaagtttgtgaaatcagcaacaca |
37044064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 312
Target Start/End: Complemental strand, 37035091 - 37034973
Alignment:
| Q |
194 |
ttgattgctatatgatactagaaaactcactattttgtatctttactagcaaaattagctgagaatatactaatacaacaatttggaagttcaaagaagt |
293 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||| ||| |||| || | || || || ||||||||||||||||||| ||||| ||| |
|
|
| T |
37035091 |
ttgattcctatatgatactaaaaaactcactattttgtatctttattaggaaaaataacagaaaagatgttaatacaacaatttggaagctcaaaagagt |
37034992 |
T |
|
| Q |
294 |
ttgtgaaatcagcaacaca |
312 |
Q |
| |
|
|||| ||||||| |||||| |
|
|
| T |
37034991 |
ttgtcaaatcagtaacaca |
37034973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University