View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7232_low_1 (Length: 450)
Name: NF7232_low_1
Description: NF7232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7232_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 41288479 - 41288919
Alignment:
| Q |
1 |
aggtgcatggcaatcattgtatcctactcagtaactactaagctatgacacagatccaactggggatttctacttcttgctaaagagtgtaactatagca |
100 |
Q |
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| T |
41288479 |
aggtgcatggcaatcattgtatcctactcagtaactactaagctatgacacagatccaactggggatttctacttcttgctaaagagtgtaactatagca |
41288578 |
T |
|
| Q |
101 |
gccaccaacatgcatttgattttccttttaggtataaacaaggtcaataccaacccagctggatattattggttctaaccttagctttttacatgtctac |
200 |
Q |
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| T |
41288579 |
gccaccaacatgcatttgattttccttttaggtataaacaaggtcaataccaacccagctggatattgttggttctaaccttagctttttacatgtctac |
41288678 |
T |
|
| Q |
201 |
ctaattatcttaagtgcccataaacaagtccaaagtaacagcacaacacaaccaagtagtagtgtactaaaccgtacattatagaaaaccattttaaaat |
300 |
Q |
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| T |
41288679 |
ctaattatcttaagtgcccataaacaagtccaaagtaacagcacaacacaaccaagtagtagtgtactaaaccgtacattatagaaaaccatttaaaaat |
41288778 |
T |
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| Q |
301 |
atttagggtttcataagctaaaaccatgtgaatctgtaaagctagctaaactccagtttgctagtgacaaattcttaagtttctttgtctgctttttgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41288779 |
atttagggtttcataagctaaaaccatgtgaatctgtaaagctagctaaactccagtttgctagtgacaaattcttaagtttctttgtctgctttttgca |
41288878 |
T |
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| Q |
401 |
ttccaactggccctcatcttaatactttcgtatagtataat |
441 |
Q |
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| T |
41288879 |
ttccaactggctctcatcttaatactttcgtatagtataat |
41288919 |
T |
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