View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7233_high_1 (Length: 329)
Name: NF7233_high_1
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 48482568 - 48482869
Alignment:
| Q |
16 |
aacctgtgaactgcacaatatattagcgtctgtgttatttgagtccccttcttcactgtagaacgcaactgtacatttaaacaatatcaacatattttcc |
115 |
Q |
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| T |
48482568 |
aacctgtgaactgcgcaatatattagcgtctgtgttatttgagtccccttcttcactgtagaacgcaactgtacatttaaacaatatcaacatattttcc |
48482667 |
T |
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| Q |
116 |
cagcagcggaagtaatagccatgtaactaaatgcttacttccataaaaatctatatattgattatggacataaatgactttgctgccctccnnnnnnnga |
215 |
Q |
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| T |
48482668 |
cagcagcggaagtaatagccatgtaactaaatgcttacttccataaaaatctatatattgattatggacataaatgactttgctgccctccaaaaaaaga |
48482767 |
T |
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| Q |
216 |
gcaaattcagaagaaaaagtagcagcttcagatcaaggactagtttaaatttaagtaaaaggatcatcatacttaccgccatgctatatcccatccttga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48482768 |
gcaaattcagaagaaaaagtagcagcttcagatcaaggactagtttaaatttaagtaaaaggatcatcatacttaccgccatgctatatcccatccttga |
48482867 |
T |
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| Q |
316 |
tg |
317 |
Q |
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|| |
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| T |
48482868 |
tg |
48482869 |
T |
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