View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7233_high_2 (Length: 298)
Name: NF7233_high_2
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 55578076 - 55577794
Alignment:
| Q |
1 |
actagtccaaaacaaagtaataaaccccagattgaaaagaaaagaagctaagcagtactatagttttatgcaaggccacaatcttgtgttcaatgccagt |
100 |
Q |
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| T |
55578076 |
actagtccaaaacaaagtaataaaccccaaattgaaaagaaaagaagctaagcagtactatagttttatgcaaggccacaatcttgtgttcaatgccagt |
55577977 |
T |
|
| Q |
101 |
atggatcacgatggtgatccaaaatcccaaccctttgctgaaagtcgtccatcctatccagtattttgtctgtcatagctgaggggtatttccaagatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55577976 |
atggatcacgatggtgatccaaaatcccaaccctttgctgaaagtcgtccatcctatccagtattttgtctgtcatagctgaggggtatttccaagatac |
55577877 |
T |
|
| Q |
201 |
agccataatggccctccaatcagagccaatagcattgtaaacctttttcatctcctctagggtgtaacaaagcacgatctgtc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55577876 |
agccataatggccctccaatcagagccaatagcattgtaaacctttttcatctcctctagggtgtaacaaagcacgatctgtc |
55577794 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21256989 - 21256948
Alignment:
| Q |
1 |
actagtccaaaacaaagtaataaaccccagattgaaaagaaa |
42 |
Q |
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|||||||||||| |||||||||||| ||| |||||||||||| |
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| T |
21256989 |
actagtccaaaataaagtaataaacaccaaattgaaaagaaa |
21256948 |
T |
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