View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7233_low_1 (Length: 617)
Name: NF7233_low_1
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 31 - 598
Target Start/End: Complemental strand, 32736615 - 32736046
Alignment:
| Q |
31 |
atactcggagacaagcaattctacttgtaaacatctaaagtatgaaaatcaattttatacttgtatcagttttaaaagtgaatcaaaacaaatacttaat |
130 |
Q |
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| T |
32736615 |
atactcggagacaagcaattctacttgtaaacatgtaaagtatgaaaatcaattttatacttgtatctgttttaaaagtgaatcaaaacaaatacttaat |
32736516 |
T |
|
| Q |
131 |
ttccctattgttgagatcagccatgaacctgcttgttttgatgttatgaacatgtttgtaacataaatcttttttaagcnnnnnnnnnnnnngcttgaat |
230 |
Q |
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| T |
32736515 |
ttccctattgttgagatcagccatgaacctgcttgttttgatgttatgaacatgtttgtaacataaatcttttttaagctttttttttttttgcttgaat |
32736416 |
T |
|
| Q |
231 |
aa--ttacatttcaccacttttctgcaatctgtacaaaaatcaaatgattgaaaacacaacaattgttttcttgacannnnnnnnnnnnnnnnnnnnnnn |
328 |
Q |
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| T |
32736415 |
aaaattacatttcaccacttttctgcaatctgtacaaaaatcaaatgattgaaaacacaacaattgttttcttgacatttttttttctttttattttttt |
32736316 |
T |
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| Q |
329 |
nctccattccacaacttatgtccttttccaaatacacatgtgctccctctccttcccatgatcataaaaatgaatagatacaacatccatttcccatcac |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32736315 |
tctccattccacaacttatgtccttttccaaatacacatgtgctccctctccttcccatgatcataaaaatgaatagatacaacatccatttcccatcac |
32736216 |
T |
|
| Q |
429 |
caaagttgcacaagttcttcacttcttctttgtcttgaagatcataagaatcatacaacaaaattgcattgacaattcagatctatgatttcatcatttc |
528 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32736215 |
caaaatttcacaagttcttcacttcttctttgtcttgaagatcataagaatcatacaacaaaattgcattgacaattcagatctatgatttcatcatttc |
32736116 |
T |
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| Q |
529 |
accaatatcttgtccttcttttttagttacattatattattactacctcctcttagctagctgaaatgtt |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32736115 |
accaatatcttgtccttcttttttagttacattatattattactacctcctcttagctaactgaaatgtt |
32736046 |
T |
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