View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7233_low_13 (Length: 285)
Name: NF7233_low_13
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_low_13 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 273
Target Start/End: Original strand, 55332 - 55601
Alignment:
| Q |
24 |
attgaaaggaaattattagaaagaagaaggtaaaaaggaaaacagttagtgaaagttaaatagttcaaaaactagaaatgtagcgccagatgaa------ |
117 |
Q |
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| T |
55332 |
attgaaaggaaattattagaaagaagaaggtaaaaaggaaaacagttagtgaaagttaaatagttcaaaaactagaaatgtagcgccagatgaatatggt |
55431 |
T |
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| Q |
118 |
--------------aaaccgaatacaagtagttttttacttattttattacggaggggatataattcttgagataaaaaaccatttcgagagtgaaaact |
203 |
Q |
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| T |
55432 |
cactatgtataaaaaaaccgaatacaagtagttttttacttattttattacggaggggatataattcttgagataaaaaaccatttcgagagtgaaaact |
55531 |
T |
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| Q |
204 |
cacctccgcagcaccaaaagagtatccatacatctcactgatccatcctttctcatatatgtcacaggtt |
273 |
Q |
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| T |
55532 |
cacttctgcagcaccaaaagagtatccatacatctcactgatccatcctttctcatatatgtcaccggtt |
55601 |
T |
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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 7785113 - 7785178
Alignment:
| Q |
201 |
actcacctccgcagcaccaaaagagtatccatacatctcactgatccatcctttctcatatatgtc |
266 |
Q |
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| T |
7785113 |
actcacttctgcagcaccaaaagagtatccgtacatctcactgatccatcctttcccatagatgtc |
7785178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 7782805 - 7782866
Alignment:
| Q |
205 |
acctccgcagcaccaaaagagtatccatacatctcactgatccatcctttctcatatatgtc |
266 |
Q |
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| T |
7782805 |
acctcagccgcaccaaatgagtacccatacatctcactgatccaccctgattcatatatgtc |
7782866 |
T |
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