View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7233_low_14 (Length: 278)
Name: NF7233_low_14
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 50807258 - 50807014
Alignment:
| Q |
16 |
tgtgtcatggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaatt |
115 |
Q |
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| T |
50807258 |
tgtgtcatggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaatt |
50807159 |
T |
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| Q |
116 |
gcgtcgagcaaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50807158 |
gcgtcgagcaaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaa |
50807059 |
T |
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| Q |
216 |
atgatactgagaggcttcagcagattaataataatatatgtaaag |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50807058 |
atgatactgagaggcttcagcagattaataataatatatgtaaag |
50807014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 50868619 - 50868863
Alignment:
| Q |
16 |
tgtgtcatggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaatt |
115 |
Q |
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| T |
50868619 |
tgtgtcatggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaatt |
50868718 |
T |
|
| Q |
116 |
gcgtcgagcaaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaa |
215 |
Q |
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| T |
50868719 |
gcgtcgagcaaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaa |
50868818 |
T |
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| Q |
216 |
atgatactgagaggcttcagcagattaataataatatatgtaaag |
260 |
Q |
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| T |
50868819 |
atgatactgagaggcttcagcagattaataataatatatgtaaag |
50868863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 19056181 - 19056413
Alignment:
| Q |
16 |
tgtgtcatggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19056181 |
tgtgtcatggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttgagaatt |
19056280 |
T |
|
| Q |
116 |
gcgtcgagcaaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19056281 |
gcgtcgagcaaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgtttaattctcaa |
19056380 |
T |
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| Q |
216 |
atgatactgagaggcttcagcagattaataata |
248 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
19056381 |
ataatactgagaggcttcagcagattaataata |
19056413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 40704546 - 40704731
Alignment:
| Q |
63 |
tagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaattgcgtcgagcaaagttggtagcagaaaacctaatactccggtggtggc |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40704546 |
tagataggttcaagaaacaacaagagaagtgtcaatcgacactctcgagcattgcgtcgagcaaagttggtagcagaaaacctaatacgccggtggtggc |
40704645 |
T |
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| Q |
163 |
tgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaaatgatactgagaggcttcagcagattaataata |
248 |
Q |
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| |||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40704646 |
tacaaatgcatcagcaaatggaagaaattcaagaaccggtgttaaattctcaagtgatactgagaggcttcagcagattaataata |
40704731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 32458518 - 32458473
Alignment:
| Q |
17 |
gtgtcatggtggagaagcacatttgaaatgtttgcggcggaaaagc |
62 |
Q |
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| T |
32458518 |
gtgtcatggtggagaagcacatttgaaatgtttgcagcggaaaagc |
32458473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 21990721 - 21990676
Alignment:
| Q |
17 |
gtgtcatggtggagaagcacatttgaaatgtttgcggcggaaaagc |
62 |
Q |
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||||||||||||||||| ||||||| |||||||| |||||| |||| |
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| T |
21990721 |
gtgtcatggtggagaagaacatttggaatgtttgaggcggagaagc |
21990676 |
T |
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