View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7233_low_19 (Length: 229)

Name: NF7233_low_19
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7233_low_19
NF7233_low_19
[»] chr2 (4 HSPs)
chr2 (18-216)||(39814491-39814689)
chr2 (61-216)||(12987364-12987526)
chr2 (86-126)||(25059704-25059744)
chr2 (86-126)||(25064503-25064543)
[»] chr1 (8 HSPs)
chr1 (18-216)||(5721811-5722009)
chr1 (20-216)||(11359361-11359558)
chr1 (51-127)||(52975688-52975764)
chr1 (87-123)||(1280528-1280564)
chr1 (90-123)||(49105523-49105556)
chr1 (91-123)||(17508545-17508577)
chr1 (85-125)||(35764138-35764178)
chr1 (91-127)||(43904365-43904401)
[»] chr5 (6 HSPs)
chr5 (20-216)||(18690997-18691194)
chr5 (22-216)||(41108940-41109135)
chr5 (18-216)||(33215106-33215303)
chr5 (150-216)||(41109725-41109791)
chr5 (69-122)||(22726480-22726534)
chr5 (90-127)||(33214546-33214583)
[»] chr8 (2 HSPs)
chr8 (18-216)||(36241109-36241307)
chr8 (51-120)||(39367637-39367707)
[»] chr3 (6 HSPs)
chr3 (18-216)||(25184690-25184889)
chr3 (81-216)||(35390487-35390629)
chr3 (51-125)||(55380341-55380415)
chr3 (33-88)||(35389691-35389746)
chr3 (91-126)||(42428432-42428467)
chr3 (91-123)||(9678749-9678781)
[»] chr4 (7 HSPs)
chr4 (18-214)||(25542328-25542525)
chr4 (52-125)||(11840868-11840941)
chr4 (51-123)||(35612-35684)
chr4 (90-125)||(48879617-48879652)
chr4 (84-125)||(40578890-40578931)
chr4 (86-123)||(40868891-40868928)
chr4 (91-119)||(45019069-45019097)
[»] chr7 (3 HSPs)
chr7 (30-216)||(17165885-17166075)
chr7 (99-216)||(41483079-41483203)
chr7 (87-123)||(29250494-29250530)
[»] chr6 (5 HSPs)
chr6 (53-126)||(10857321-10857394)
chr6 (58-148)||(832031-832122)
chr6 (169-216)||(832201-832248)
chr6 (86-126)||(23112484-23112524)
chr6 (86-126)||(23117282-23117322)
[»] scaffold0245 (1 HSPs)
scaffold0245 (87-123)||(6206-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (87-123)||(6536-6572)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 39814491 - 39814689
Alignment:
Q  18 atagtgagttactattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814491 atagtgagttactattataaataaagatgcagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 39814590  T
Q  118 tagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814591 tagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 39814689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 61 - 216
Target Start/End: Complemental strand, 12987526 - 12987364
Alignment:
Q  61 gggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttg-gtacttttctgcagttactttcttatatcaata 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| | ||||||||    
T  12987526 gggcattgggtattttgtatgtgggttggtttgggagagactaggctctctgattcctagaggttgattacttttctgcagttactttcctgtatcaata 12987427  T
Q  160 ataatagat------cattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||| ||      |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  12987426 ataatacatcacgtgcattcccttattattatgctataatctcccaaataccatagaattatc 12987364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 25059704 - 25059744
Alignment:
Q  86 ttggtttgggagagactaggctctctaattcctagaggttg 126  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  25059704 ttggtttgggagattctaggctctctaagtcctagaggttg 25059744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 25064503 - 25064543
Alignment:
Q  86 ttggtttgggagagactaggctctctaattcctagaggttg 126  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  25064503 ttggtttgggagattctaggctctctaagtcctagaggttg 25064543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 5721811 - 5722009
Alignment:
Q  18 atagtgagttactattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5721811 atagtgagttactattataaataaagatgcagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 5721910  T
Q  118 tagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5721911 tagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 5722009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 11359558 - 11359361
Alignment:
Q  20 agtgagttactattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattccta 119  Q
    ||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11359558 agtgagttagtattataaataaagatgcagaggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattccta 11359459  T
Q  120 gaggttgg-tacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11359458 gaggttggttacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatc 11359361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 52975764 - 52975688
Alignment:
Q  51 ggaaaagggagggcattgggtattttgtatg-tgggttggtttgggagagactaggctctctaattcctagaggttgg 127  Q
    ||||||||||||||||| |||  ||| |||| | |||| | |||||||||||||||||||||||||||||||||||||    
T  52975764 ggaaaagggagggcattcggttatttttatgtttggttag-ttgggagagactaggctctctaattcctagaggttgg 52975688  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 1280528 - 1280564
Alignment:
Q  87 tggtttgggagagactaggctctctaattcctagagg 123  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1280528 tggtttgggagagactaggctctctgattcctagagg 1280564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 49105523 - 49105556
Alignment:
Q  90 tttgggagagactaggctctctaattcctagagg 123  Q
    |||||||||||||||||||||| |||||||||||    
T  49105523 tttgggagagactaggctctctgattcctagagg 49105556  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 17508545 - 17508577
Alignment:
Q  91 ttgggagagactaggctctctaattcctagagg 123  Q
    ||||||||||| |||||||||||||||||||||    
T  17508545 ttgggagagacaaggctctctaattcctagagg 17508577  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 35764138 - 35764178
Alignment:
Q  85 gttggtttgggagagactaggctctctaattcctagaggtt 125  Q
    |||||||||||||||||||| |||| ||||||||| |||||    
T  35764138 gttggtttgggagagactagactctataattcctaaaggtt 35764178  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 43904365 - 43904401
Alignment:
Q  91 ttgggagagactaggctctctaattcctagaggttgg 127  Q
    ||||||||||||||||||||||||| | |||||||||    
T  43904365 ttgggagagactaggctctctaatttcaagaggttgg 43904401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 18690997 - 18691194
Alignment:
Q  20 agtgagttactattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattccta 119  Q
    ||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18690997 agtgagttagtattataaataaagatgcagaggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattccta 18691096  T
Q  120 gaggttgg-tacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18691097 gaggttggttacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatc 18691194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 41108940 - 41109135
Alignment:
Q  22 tgagttactattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctaga 121  Q
    ||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41108940 tgagttagtattataaataaagatgcagaggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactgggctctctaattcctaga 41109039  T
Q  122 ggttgg-tacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41109040 ggttggttacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatc 41109135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 33215303 - 33215106
Alignment:
Q  18 atagtgagttactattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 117  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  33215303 atagtgagttagtattataaataaagatgcagaggaaaagggagggcattgggtaatttgtatgtgggttggtttgggagagactaggctctctaatttc 33215204  T
Q  118 tagaggttgg-tacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||  | |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  33215203 tagaggttggttacttttctgcagttactttcatgtatcaataata--acatcattcccttattattatgcaataatctcccaaataccattgaattatc 33215106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 41109725 - 41109791
Alignment:
Q  150 tatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41109725 tatatcaataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatc 41109791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 22726480 - 22726534
Alignment:
Q  69 ggtattttgtatgtgggtt-ggtttgggagagactaggctctctaattcctagag 122  Q
    ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||    
T  22726480 ggtatttcgtatgttggtttggtttgggagagactaggctctctaattcctagag 22726534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 33214546 - 33214583
Alignment:
Q  90 tttgggagagactaggctctctaattcctagaggttgg 127  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  33214546 tttgggagagactagggtctctaattcctaaaggttgg 33214583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 36241307 - 36241109
Alignment:
Q  18 atagtgagttactattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 117  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36241307 atagtgagttagtattataaataaagatgcagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 36241208  T
Q  118 tagaggttgg-tacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  36241207 tagaggttggttacttttctgcagttactttcctgtatcaataataatacatcattcccttattattatgcaat-atctcccaaataccatagaattatc 36241109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 39367637 - 39367707
Alignment:
Q  51 ggaaaagggagggcattgggtattttgtatg-tgggttggtttgggagagactaggctctctaattcctag 120  Q
    ||||||||||||| | | ||| ||||||||| ||| ||||||| ||||||| |||||||| ||||||||||    
T  39367637 ggaaaagggaggggactaggtgttttgtatgttggtttggttttggagagattaggctctataattcctag 39367707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 25184690 - 25184889
Alignment:
Q  18 atagtgagttactattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 117  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25184690 atagggagttagtattataaataaagatgcagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 25184789  T
Q  118 tagaggttgg-tacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| | |||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  25184790 tagaggttggttacttttctgcagttactttcctatatcaataataaaacatcattcgcttattattatgcaataatctcccaaataccatagatttatc 25184889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 35390487 - 35390629
Alignment:
Q  81 gtgggttggtttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttatatcaataataatagat------cattc 173  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||| | | |||||||||||||| ||      ||||     
T  35390487 gtgggttggtttgggagagactaggctctctaactcctaaaggttggttacctttctgcagttacttacatgtatcaataataatacatcacatgcattt 35390586  T
Q  174 ctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    | |||||||| | ||||||||| ||||||||||||||||||||    
T  35390587 ccttattattttacaataatctaccaaataccatagaattatc 35390629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 55380415 - 55380341
Alignment:
Q  51 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt 125  Q
    |||||| |||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55380415 ggaaaaaggagggcattagttattttatatgttggttggtttgggagagactaggctctctaattcctagaggtt 55380341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 35389691 - 35389746
Alignment:
Q  33 tataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttg 88  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  35389691 tataaataaagatgtagaggaaaagggtgggcattggatattttgtatgtgggttg 35389746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 42428432 - 42428467
Alignment:
Q  91 ttgggagagactaggctctctaattcctagaggttg 126  Q
    ||||||||||||||||||||||||||||||||||||    
T  42428432 ttgggagagactaggctctctaattcctagaggttg 42428467  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 9678749 - 9678781
Alignment:
Q  91 ttgggagagactaggctctctaattcctagagg 123  Q
    ||||||||||||||||||||| |||||||||||    
T  9678749 ttgggagagactaggctctctgattcctagagg 9678781  T

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Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 25542525 - 25542328
Alignment:
Q  18 atagtgagttactattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcc 117  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |    
T  25542525 atagtgagttagtattataaataaagatgcagaggaaaagggagggcattgggtattttttatgtgggttggtttgggagggactaggctctctaattgc 25542426  T
Q  118 tagaggttgg-tacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaatta 214  Q
    |||||||||| ||||||| ||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  25542425 tagaggttggttacttttatgcagttactttcctgtatcaataataatacatcattcccttattattatgcaataatctcccaaataccatagaatta 25542328  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 11840868 - 11840941
Alignment:
Q  52 gaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt 125  Q
    |||||||||||||| |||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||    
T  11840868 gaaaagggagggcactgggtattttgtatatagtttggtttgggagagactaggttctctaattcctagaggtt 11840941  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 35684 - 35612
Alignment:
Q  51 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagagg 123  Q
    ||||||||||| || || ||||||||||| || ||||||||||||| ||||||  | ||||||||||||||||    
T  35684 ggaaaagggagagctttaggtattttgtacgttggttggtttgggatagactacaccctctaattcctagagg 35612  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 48879652 - 48879617
Alignment:
Q  90 tttgggagagactaggctctctaattcctagaggtt 125  Q
    |||||||||||||||||||||||| |||||||||||    
T  48879652 tttgggagagactaggctctctaagtcctagaggtt 48879617  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 40578931 - 40578890
Alignment:
Q  84 ggttggtttgggagagactaggctctctaattcctagaggtt 125  Q
    |||||| ||||||||||||| |||||||||||||||| ||||    
T  40578931 ggttgggttgggagagactaagctctctaattcctagtggtt 40578890  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 40868891 - 40868928
Alignment:
Q  86 ttggtttgggagagactaggctctctaattcctagagg 123  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  40868891 ttggtttgagagagaataggctctctaattcctagagg 40868928  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 45019097 - 45019069
Alignment:
Q  91 ttgggagagactaggctctctaattccta 119  Q
    |||||||||||||||||||||||||||||    
T  45019097 ttgggagagactaggctctctaattccta 45019069  T

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Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 17166075 - 17165885
Alignment:
Q  30 tattataaataaagatgtagaggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttgg-t 128  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17166075 tattataaataaagatgcagaggaaaagggagggcattgggtagtttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggtt 17165976  T
Q  129 acttttctgcagttactttcttat---atcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||||||||||||||||| | |   ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17165975 acttttctgcagttactttcctgtatgatcaataataatatatcattcccttattattatgcaataatctcccaaataccatagaattatc 17165885  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 41483079 - 41483203
Alignment:
Q  99 gactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagat------cattcctttattattatgcaata 191  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |||||||||| ||      |||||| ||||||||||||||||    
T  41483079 gactaggctctctaattcctagaggtaggttacttttctgcagttactttcctgtatgaataataatacatcacgtgcattcccttattattatgcaata 41483178  T
Q  192 atctcccaaataccatagaattatc 216  Q
    |||||||||||||||||||||||||    
T  41483179 atctcccaaataccatagaattatc 41483203  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 29250494 - 29250530
Alignment:
Q  87 tggtttgggagagactaggctctctaattcctagagg 123  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29250494 tggtttgggagagactaggctctctgattcctagagg 29250530  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 10857394 - 10857321
Alignment:
Q  53 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttg 126  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10857394 aaaagggagggcattgagtattttgtatgttggttggtttgggagagactaggctctctaattcctagaggttg 10857321  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 832031 - 832122
Alignment:
Q  58 ggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagagg-ttggtacttttctgcagttactttc 148  Q
    |||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  832031 ggagggcaatgagtattttgtatgttggttggtttgggagagactaggctctataattcctagaggtttgttagttttatgcagttactttc 832122  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 832201 - 832248
Alignment:
Q  169 cattcctttattattatgcaataatctcccaaataccatagaattatc 216  Q
    |||||| |||||||||| |||||||| |||||||| ||||||||||||    
T  832201 cattcccttattattatccaataatcccccaaatatcatagaattatc 832248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 23112484 - 23112524
Alignment:
Q  86 ttggtttgggagagactaggctctctaattcctagaggttg 126  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  23112484 ttggtttgggagattctaggctctctaagtcctagaggttg 23112524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 23117282 - 23117322
Alignment:
Q  86 ttggtttgggagagactaggctctctaattcctagaggttg 126  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  23117282 ttggtttgggagattctaggctctctaagtcctagaggttg 23117322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 6206 - 6242
Alignment:
Q  87 tggtttgggagagactaggctctctaattcctagagg 123  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6206 tggtttgggagagactaggctctctgattcctagagg 6242  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 6536 - 6572
Alignment:
Q  87 tggtttgggagagactaggctctctaattcctagagg 123  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6536 tggtttgggagagactaggctctctgattcctagagg 6572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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