View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7233_low_21 (Length: 218)
Name: NF7233_low_21
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 31405901 - 31406105
Alignment:
| Q |
1 |
aagacgaaacaacttgttttgctgctgggactctgaaaataaaattctgcattttcatgaagaggaccctgctagcttctcctaatctgttccgaactgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
31405901 |
aagacgaaacaacttgttttgctgctgggactctgaaaataaaattatgcattttcatgaaaaggaccctgctagcgtctcctaatctgttccgaactgc |
31406000 |
T |
|
| Q |
101 |
aattgcctcgttcactaacgaattaggaaataatgattcgaatatcggaacaagattgttcaacttcacaaatatgtcgaccattttgaataaacgccac |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31406001 |
aattgcctcgttcactaatgaattaggaaataatgattcgaattttggaacaagattgttcaacttcacaaatatgtcgaccattttgaacaaacgccac |
31406100 |
T |
|
| Q |
201 |
tttga |
205 |
Q |
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||||| |
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| T |
31406101 |
tttga |
31406105 |
T |
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