View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7233_low_22 (Length: 213)
Name: NF7233_low_22
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 34677814 - 34677928
Alignment:
| Q |
80 |
tagaagaaactatagcagtgttttctaagctacatgttcagctgcatttgctctccatgtttccagaagagaaaatactaacagtgaagttagcctttca |
179 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34677814 |
tagaagaaactatagcagagttttctaagctacatgttcagctgcatttgctctccatgtttccagaagagaaaatactaacagtgaagttagcctttca |
34677913 |
T |
|
| Q |
180 |
ttttcatgaaaacag |
194 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34677914 |
ttttcatgaaaacag |
34677928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 34677735 - 34677780
Alignment:
| Q |
12 |
ataatactaataggagagttagggttgttttatctatgattagaat |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34677735 |
ataatactaataggagagttagggttgttttatctatgattagaat |
34677780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University