View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7233_low_3 (Length: 528)
Name: NF7233_low_3
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 7218663 - 7218156
Alignment:
| Q |
1 |
aaaaaagaaataataatgtaagttcacacttatgaggtacatatatatgaatgaatcatgtgaattgtgtaaagttgaataaattcttactaatgacagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218663 |
aaaaaagaaataataatgtaagttcacacttattaagtacatatat--gaatgaatcatgtgaattgtgtaaagttgaataaattcttactaatgacagg |
7218566 |
T |
|
| Q |
101 |
aatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatcaatcaacattacatcgaaacagtcctttctttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
7218565 |
aatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgaggatcaatcaacattacatcgaaacagtcctttctttcc |
7218466 |
T |
|
| Q |
201 |
aacatgttgaaggcatcagaagccatactacatttggtaactgaaataaacaatatcagaataaagaaacatgaaaacatataaaagtaagaatttttac |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7218465 |
aacatgttgaaggcatcagaagccatgctacatttggtaactgaaataaacaatatcagaataaagaaacatgaaaacatataaaagtaagaatttttac |
7218366 |
T |
|
| Q |
301 |
caaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7218365 |
caaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtc |
7218266 |
T |
|
| Q |
401 |
atgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttctcggtgaaaagggccattgcaattttgtcaagaaagtaacggaattagttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
7218265 |
atgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttgtcggtgaaaagggccattgcaattttgtcaagaaagtaacggaatgagttt |
7218166 |
T |
|
| Q |
501 |
cttagggtag |
510 |
Q |
| |
|
|||||||||| |
|
|
| T |
7218165 |
cttagggtag |
7218156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 68 - 492
Target Start/End: Complemental strand, 8162314 - 8161891
Alignment:
| Q |
68 |
tgtaaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatca |
167 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||| | ||||||||| |||| ||||||||||||| | |||||||||||||||||| ||| |||| |
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|
| T |
8162314 |
tgtaaagttaaataaattcttactgatagcaggaatctgaagttgtagggaaacatgttggacaaagtcacaggcatccatgtttggcatacgagcatca |
8162215 |
T |
|
| Q |
168 |
atcaacattacatcgaaacagtcctttctt-tccaacatgttgaaggcatcagaagccatactacatttggtaactgaaataaacaatatcagaataaag |
266 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||||| | || ||||||||||||| | |||||||||||||| | |||||||| | ||||| |
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|
| T |
8162214 |
atcaacattacatcgaaacagcacttttttgtccaacaaatccaatgcatcagaagccacattacatttggtaactaatccaaacaataaaaagataaac |
8162115 |
T |
|
| Q |
267 |
aaacatgaaaacatataaaagtaaga-atttttaccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgatta |
365 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||||| | || || |||||||| |||||||||| |||||| | |||||||||||||||| |
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|
| T |
8162114 |
aaacatgaaaacaaattaaagtaagatatttttaccaaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcatcgatta |
8162015 |
T |
|
| Q |
366 |
cacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttctcggtgaaaagggcca |
465 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| || ||||||||| || |
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|
| T |
8162014 |
cacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggacctagagaccttctgggaatgat---ggtttgtcaatgaaaagggtca |
8161918 |
T |
|
| Q |
466 |
ttgcaattttgtcaagaaagtaacgga |
492 |
Q |
| |
|
|||||||||||||| ||||| |||||| |
|
|
| T |
8161917 |
ttgcaattttgtcaggaaagaaacgga |
8161891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 7317403 - 7317650
Alignment:
| Q |
6 |
agaaataataatgtaagttcacacttatgaggtacatatatatgaatgaatcatgtgaattgtgtaaagttgaataaattcttactaatgacaggaatgt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
7317403 |
agaaataataatgtaagttcacacttattaagtacatatatatgaatgaatcatgtgaattgtgtaaagttgaagaaattcttactaatgacaggaattt |
7317502 |
T |
|
| Q |
106 |
tgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatcaatcaacattacatcgaaacagtcctttctttccaacat |
205 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
7317503 |
tgagtagtagggtaacatgttggacaaagtcataaacatccatgtttggcatatgagcatcaatcaacattacatcaaaacagtcctttctttccatcga |
7317602 |
T |
|
| Q |
206 |
gttgaaggcatcagaagccatactacatttggtaactgaaataaacaa |
253 |
Q |
| |
|
|| |||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
7317603 |
attcaaggcatcagaagctgtattgcatttggtaactgaaataaacaa |
7317650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 7244105 - 7243922
Alignment:
| Q |
67 |
gtgtaaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatc |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7244105 |
gtgtaaagttgaataaattcttactaatgacaggaatgttgagttgtagggtaacatgttggacaaagtcataagcatccatgtttggcatatgaggatc |
7244006 |
T |
|
| Q |
167 |
aatcaacattacatcgaaacagtcctttctttccaacatgttgaaggcatcagaagccatactacatttggtaactgaaataaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7244005 |
aatcaacattacatcgaaacagtcctttctttccaacaagttcaaggcatcagaagctgtgttacatttggtaactgaaataaa |
7243922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 70 - 253
Target Start/End: Original strand, 7324256 - 7324439
Alignment:
| Q |
70 |
taaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatcaat |
169 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||| | || |||||||||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
7324256 |
taaagttgaagaaattcttactaataacaggaatgttgagttgtagggtagcattttggacaaagtcatagacatccatgttcggcatatgagcatcaat |
7324355 |
T |
|
| Q |
170 |
caacattacatcgaaacagtcctttctttccaacatgttgaaggcatcagaagccatactacatttggtaactgaaataaacaa |
253 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || || ||||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
7324356 |
caacattacatcataacagtcctttctttccaacaagtacaaagcatcagaagctgaattgcatttggtaactgaaataaacaa |
7324439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 441
Target Start/End: Original strand, 7317778 - 7317861
Alignment:
| Q |
358 |
atcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatgatg |
441 |
Q |
| |
|
||||||||||||||||||| || || || |||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
7317778 |
atcgattacacatctcctcaatagagttgaggaaagtgatgtcatgatcaattgcaataaccttgagaccggctgggaatgatg |
7317861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 441
Target Start/End: Complemental strand, 7243809 - 7243708
Alignment:
| Q |
340 |
actaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatga |
439 |
Q |
| |
|
||||||| | ||||| | ||||||||||||| ||||| || | || || | |||||||||||||||||| |||| |||||||||||| | |||||||| |
|
|
| T |
7243809 |
actaaccttgataatggaatcgattacacatatcctcaatagtgttaagaacagtgatgtcatgatcaatagcaataaccttgagaccagcagggaatga |
7243710 |
T |
|
| Q |
440 |
tg |
441 |
Q |
| |
|
|| |
|
|
| T |
7243709 |
tg |
7243708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7244193 - 7244127
Alignment:
| Q |
1 |
aaaaaagaaataataatgtaagttcacacttatgaggtaca---tatatatgaatgaatcatgtgaa |
64 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||| ||| |||||||||||||||||| |||| |
|
|
| T |
7244193 |
aaaaaagaaataataatgtcagtccacacttctgagtaacaatatatatatgaatgaatcatatgaa |
7244127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 70 - 253
Target Start/End: Original strand, 22766295 - 22766478
Alignment:
| Q |
70 |
taaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatcaat |
169 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||| |||||||| | | || ||| ||||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
22766295 |
taaagttgaagaaatacttactaataacaggaatattgagttgaccggtagcatgttgaacaaaatcataggcatccatgtttggcatatgagcatcaat |
22766394 |
T |
|
| Q |
170 |
caacattacatcgaaacagtcctttctttccaacatgttgaaggcatcagaagccatactacatttggtaactgaaataaacaa |
253 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||| |||||||| || | ||||||||||||||||||||||| |
|
|
| T |
22766395 |
taacattacatcaaaacagtcctttctttccaacaagttcaaggcttcagaagctgtattgcatttggtaactgaaataaacaa |
22766478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 441
Target Start/End: Original strand, 22766557 - 22766662
Alignment:
| Q |
336 |
agtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctggga |
435 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||||||||| |||| || |||| |||| |||||||||||||||||| ||| |||||||| || |||| |
|
|
| T |
22766557 |
agtaactaaccttgataatgacatcgattacacatctcctcaatggtgttaaggaaagtggtgtcatgatcaattgcaataacgttgagaccatcaggga |
22766656 |
T |
|
| Q |
436 |
atgatg |
441 |
Q |
| |
|
|||||| |
|
|
| T |
22766657 |
atgatg |
22766662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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