View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7233_low_4 (Length: 527)
Name: NF7233_low_4
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 101 - 512
Target Start/End: Complemental strand, 5884475 - 5884064
Alignment:
| Q |
101 |
gttgttagctcctcctaaactaacaacctctttaattatccctctaaacaaccttgcttcctcaacatcactcacatcacaatcatttccatagtatctt |
200 |
Q |
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| T |
5884475 |
gttgttagctcctcctaaactaacaacctctttaattatccctctaaacaaccttgcttcctcaacatcactcacatcacaatcatttccatagtatctt |
5884376 |
T |
|
| Q |
201 |
ttccccgacaccattctcattatagtattaaatgtcatttccgaaaacataggtctaagttccacttcggtgaaaccattgtatgatttttgtgctagct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5884375 |
ttccccgacaccattctcattatagtattaaatgtcatttccgaaaacataggtctaagttccacttcggtgaaaccattgtatgatttttgtgctagct |
5884276 |
T |
|
| Q |
301 |
tttgtattagtctcgtaatctcatctcttcttatttccaagaaggaatttaaacgatgagatgagagtatttcaattgataatattcgtcgaagattgcg |
400 |
Q |
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| T |
5884275 |
tttgtattagtctcataatctcatctcttcgtatttccaagaaggaatttaaacgatgagatgagagtatttcaattgataatattcgtcgaagattgcg |
5884176 |
T |
|
| Q |
401 |
ccaatggtcaccataaggtgattgtgctaccgtagtattgttgtagccaatatattttccagttaagaaatgaggtcggttcgctaaaactatgtcgttt |
500 |
Q |
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| T |
5884175 |
ccaatggtcaccataaggtgattgtgctaccgtagtattgttgtagccaatatattttccagttaagaaatgaggtcggttcgctaaaactatgtcgttt |
5884076 |
T |
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| Q |
501 |
ttggtaaaacat |
512 |
Q |
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| T |
5884075 |
ttggtaaaacat |
5884064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5884575 - 5884525
Alignment:
| Q |
1 |
gcccttgtaaaaatgcatcggttctcttactaatcttcttaagcctctttt |
51 |
Q |
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| T |
5884575 |
gcccttgtaaaaatgcatcggttctcttactaatcttcttaagcctctttt |
5884525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 39586702 - 39586782
Alignment:
| Q |
166 |
catcactcacatcacaatcatttccatagtatcttttccccgacaccattctcattatagtattaaatgtcatttccgaaa |
246 |
Q |
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||||||||||||||||||| | ||||| ||||| || || || | |||||||||||| || ||||| ||||| ||||||| |
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| T |
39586702 |
catcactcacatcacaatcctcaccataatatctctttccagatatcattctcattatcgtgttaaaagtcatctccgaaa |
39586782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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