View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7233_low_6 (Length: 454)
Name: NF7233_low_6
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 38983226 - 38983653
Alignment:
| Q |
10 |
aagaatattcgaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatgaggtaactcagagcagatgttttggaatttt |
109 |
Q |
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| T |
38983226 |
aagaatattagaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatgaggtaactcatagcagacgttttgggatttt |
38983325 |
T |
|
| Q |
110 |
ttccagagttcttgtggatgtggacctatctgagcagctctttgaaactgttgttgtggaaagggaagatcacgctctgtccattgatgtcttttatgat |
209 |
Q |
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| T |
38983326 |
ttccagagttcttgtggatgtggacctatctgagcagctctttgaaactgttgttgtggaaagggaagatcatgctctgtccattgatgtcttttatgag |
38983425 |
T |
|
| Q |
210 |
aagcatccttccttctgtgctaattacaaaaccttgggacataacttaatcacacaaacaatactgaagtgcctgctagaatgaaaattaggactgattt |
309 |
Q |
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| T |
38983426 |
aagcatccttccttctgtgctaattgcaaaaccttaggacatagcttaatcacacaaacaatactgaagtgcctgctagaatgaaaactaggactgattt |
38983525 |
T |
|
| Q |
310 |
gaatggaaagaaacatgcttctaacacatccaatgctttcaaaatcgtatttttcaagaaacaaggtggacttgatgtgcatagcaagaaaaatcttgca |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38983526 |
gaatggaaagaaacatgcttctaacacatccaatgctttcaaaatcgtatttttcaagaaacaaggtggacttgatgtgcatagcaagaaaaatcctgca |
38983625 |
T |
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| Q |
410 |
agtgcgattctcaatgttgaagaaattg |
437 |
Q |
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| T |
38983626 |
agtgggattctcaatgttgaagaaattg |
38983653 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 28103032 - 28102963
Alignment:
| Q |
10 |
aagaatattcgaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatga |
79 |
Q |
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||||||||| |||||||| |||||| ||||||||||||| || ||||| || |||||||| |||||||| |
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| T |
28103032 |
aagaatattggaggaagagaaccctttttgagattgcttatggtttaggcactcctcttgctattgatga |
28102963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 36904969 - 36905038
Alignment:
| Q |
10 |
aagaatattcgaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatga |
79 |
Q |
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||||||||| ||||||||| |||| ||||||||||||| || ||||| || |||||||| |||||||| |
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| T |
36904969 |
aagaatattggaggaagacggccctttttgagattgctttcggtttaggcactcctcttgctattgatga |
36905038 |
T |
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