View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7233_low_7 (Length: 454)
Name: NF7233_low_7
Description: NF7233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7233_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 243 - 450
Target Start/End: Complemental strand, 785730 - 785523
Alignment:
| Q |
243 |
tgggatgcactcccacttcaaccatgttttcgaccgtgatttccttcattaaatataggtaacaaagtttgtatctcataaccaagcaaaatatgataat |
342 |
Q |
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| T |
785730 |
tgggatgcactcccacttcaaccatgttttcgaccgtgatttccttgattaaatataggtaacaaagtttctatctcataaccaagcaaaaaatgataat |
785631 |
T |
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| Q |
343 |
ttggagttttaataataacttgctttccttttttcagcttaattagagttcttgtacctatttgttagccttttgaaataaaagtggttacgtattacgc |
442 |
Q |
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| T |
785630 |
ttggagtttcaataataacttgctttccttttttcagcttaattagatttcttgtacctatttgttagccttttgaaataacagtggttacctatgaagc |
785531 |
T |
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| Q |
443 |
acggacac |
450 |
Q |
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|||||||| |
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| T |
785530 |
acggacac |
785523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 785954 - 785795
Alignment:
| Q |
19 |
tctatatattagaaaccaaaatcaaaggcattgagtagaaaaatgtagtaaaggaagagagtggttcaaaggttgtggtacgtagcactaaatttcaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
785954 |
tctatatattagaaaccaaaatcaaaggcattgagtagaaaaatgtagtaaaggaagagagtggttcaaaggttgtggtacgtagcactaaatttcaaaa |
785855 |
T |
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| Q |
119 |
ccagtaacacaaatatccctccatcttcaatcatcatcttagttttgctggatttcaaat |
178 |
Q |
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| T |
785854 |
ccagtaacacaaatatccctccatcttcaatcatcatcttagttttgctggatttcaaat |
785795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 407190 - 407252
Alignment:
| Q |
245 |
ggatgcactcccacttcaaccatgttttcgaccgtgatttccttcattaaatataggtaacaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
407190 |
ggatgcactcccacttcaaccatgttttcgaccgtgatttccttgattaaatataggtaacaa |
407252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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