View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7234_high_1 (Length: 250)

Name: NF7234_high_1
Description: NF7234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7234_high_1
NF7234_high_1
[»] chr4 (3 HSPs)
chr4 (13-250)||(4156583-4156819)
chr4 (10-69)||(5362033-5362092)
chr4 (16-69)||(9149811-9149864)
[»] chr3 (3 HSPs)
chr3 (10-69)||(17796377-17796436)
chr3 (10-69)||(19104817-19104876)
chr3 (19-69)||(24649768-24649818)
[»] chr2 (4 HSPs)
chr2 (10-69)||(19245153-19245212)
chr2 (13-69)||(1404783-1404839)
chr2 (13-69)||(1690835-1690891)
chr2 (13-69)||(16766710-16766766)
[»] chr5 (2 HSPs)
chr5 (10-68)||(23172502-23172560)
chr5 (13-69)||(18051603-18051659)
[»] chr6 (7 HSPs)
chr6 (8-69)||(7223519-7223580)
chr6 (26-66)||(2912333-2912373)
chr6 (13-69)||(26053369-26053425)
chr6 (13-69)||(26073422-26073478)
chr6 (26-69)||(17103202-17103245)
chr6 (13-69)||(6943533-6943589)
chr6 (13-69)||(15528183-15528239)
[»] chr1 (3 HSPs)
chr1 (13-69)||(34478843-34478899)
chr1 (10-69)||(23528656-23528715)
chr1 (13-69)||(12800654-12800710)
[»] chr8 (3 HSPs)
chr8 (13-69)||(5922049-5922105)
chr8 (10-54)||(6292412-6292456)
chr8 (13-57)||(22910275-22910319)
[»] chr7 (2 HSPs)
chr7 (26-70)||(5715289-5715333)
chr7 (13-69)||(44944922-44944978)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 4156819 - 4156583
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaatccctaaactcttacaaattatctataccttgagatattcagtt 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4156819 tgaataaagtcataaaatcctaaattttaagatttaagtcgggattttgacaacaatccctaaactcttacaaattatatataccttgagatattcagtt 4156720  T
Q  113 aaaaactagatttagttcaagtctgattacaggttgacaagtttaaaaattcaatcataaacttgtttaattcaatgacacattcnnnnnnnnnnnnnnn 212  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  4156719 aaaaactagatttagttcaagtctg-ttacaggttgacaagtttaaaaattcaatcataaacttgtttaattcaatgacacattcaaaaaatctgaaaaa 4156621  T
Q  213 ngtttcttctgataattacttaaattatatctgtaccc 250  Q
     |||||||||||||||||||||||||||||||||||||    
T  4156620 agtttcttctgataattacttaaattatatctgtaccc 4156583  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 5362033 - 5362092
Alignment:
Q  10 agatgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    ||||||| ||||||  |||||||| | ||||| |||||||||||||||| ||||||||||    
T  5362033 agatgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 5362092  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 9149811 - 9149864
Alignment:
Q  16 ataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    ||||||||  |||||||||| ||||| |||||||||||||||| |||| |||||    
T  9149811 ataaagtcgcaaaatcctaaattttaggatttaagtcgggattttgaccacaat 9149864  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 17796436 - 17796377
Alignment:
Q  10 agatgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||||||||||||| ||||||||||  ||||| |||||||||||| ||| ||||||||||    
T  17796436 agatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaat 17796377  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 19104876 - 19104817
Alignment:
Q  10 agatgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||||||||||||| ||||||||||  ||||| |||||||||||| ||| ||||||||||    
T  19104876 agatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaat 19104817  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 24649768 - 24649818
Alignment:
Q  19 aagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||||| |||||||||  ||||| |||||||||||||||| ||||||||||    
T  24649768 aagtcaaaaaatcctagattttacgatttaagtcgggattttgacaacaat 24649818  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 19245212 - 19245153
Alignment:
Q  10 agatgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||||| ||||||| ||||||||| | |||||| ||||||||||||||| ||||||||||    
T  19245212 agatgagtaaagtcgtaaaatcctgaattttaaaatttaagtcgggattttgacaacaat 19245153  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 1404839 - 1404783
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||| |||||||||| |||||  ||||||||||||||| ||||||||||    
T  1404839 tgaagaaagtcacaaaatcctaaattttagaatttaagtcgggattttgacaacaat 1404783  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 1690835 - 1690891
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||| |||||||||| ||||||||||||||||||  || ||||||||||    
T  1690835 tgaagaaagtcacaaaatcctaaattttaagatttaagtcggagttttgacaacaat 1690891  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 16766766 - 16766710
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||||||| || ||||||||||| ||||||||||||||||   ||| ||||||||||    
T  16766766 tgaataaaatcgtaaaatcctaaattttaagatttaagtcaaaattttgacaacaat 16766710  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 23172502 - 23172560
Alignment:
Q  10 agatgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaa 68  Q
    ||||||| ||||||  |||||||||| ||||| |||||||||||||||| |||||||||    
T  23172502 agatgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaa 23172560  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 18051603 - 18051659
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||  |||||||||  ||||| |||||||||||||||| ||||||||||    
T  18051603 tgaagaaagtcgcaaaatcctatattttaggatttaagtcgggattttgacaacaat 18051659  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 7223580 - 7223519
Alignment:
Q  8 agagatgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| |||| ||||||  |||||||||| ||||| |||||||||||||||| ||||||||||    
T  7223580 agaggtgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaat 7223519  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 2912333 - 2912373
Alignment:
Q  26 aaaatcctaatttttaagatttaagtcgggattatgacaac 66  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  2912333 aaaatcctaaattttaagatttaagtcgggattttgacaac 2912373  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 26053369 - 26053425
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||  |||||||||  |||||||||||||||||||||| ||||||||||    
T  26053369 tgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26053425  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 26073422 - 26073478
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||  |||||||||  |||||||||||||||||||||| ||||||||||    
T  26073422 tgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26073478  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 17103245 - 17103202
Alignment:
Q  26 aaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||||||| | |||||||||||||||||||||| ||||||||||    
T  17103245 aaaatcctgaattttaagatttaagtcgggattttgacaacaat 17103202  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 6943533 - 6943589
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||  |||||||| | ||||| |||||||||||||||| ||||||||||    
T  6943533 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 6943589  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 15528183 - 15528239
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||  |||||||| | ||||| |||||||||||||||| ||||||||||    
T  15528183 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 15528239  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 34478843 - 34478899
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||| ||||||| || |||||||||||||||||||||| | ||||||||    
T  34478843 tgaagaaagtcacaaaatcccaaattttaagatttaagtcgggattttaacaacaat 34478899  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 23528715 - 23528656
Alignment:
Q  10 agatgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    ||||||| ||||||  |||||||| | ||||||||||||||| |||||| ||||||||||    
T  23528715 agatgaagaaagtcgcaaaatcctgaattttaagatttaagttgggattttgacaacaat 23528656  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 12800654 - 12800710
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| |||||| ||||||||||| ||||| ||||||||| |||||| | ||||||||    
T  12800654 tgaagaaagtcgtaaaatcctaaattttaggatttaagttgggattttcacaacaat 12800710  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 5922105 - 5922049
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||| ||||||||   ||||| |||||||||||||||| ||||||||||    
T  5922105 tgaagaaagtcacaaaatcctggattttaggatttaagtcgggattttgacaacaat 5922049  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 6292412 - 6292456
Alignment:
Q  10 agatgaataaagtcataaaatcctaatttttaagatttaagtcgg 54  Q
    ||||||| ||||||| |||||| ||| ||||||||||||||||||    
T  6292412 agatgaaaaaagtcacaaaatcttaaattttaagatttaagtcgg 6292456  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 22910275 - 22910319
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggat 57  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||    
T  22910275 tgaagaaagtcgtaaaatcctaaattttaggatttaagtcgggat 22910319  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 5715333 - 5715289
Alignment:
Q  26 aaaatcctaatttttaagatttaagtcgggattatgacaacaatc 70  Q
    |||||||| | ||||| |||||||||||||||| |||||||||||    
T  5715333 aaaatcctgaattttaggatttaagtcgggattttgacaacaatc 5715289  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 44944922 - 44944978
Alignment:
Q  13 tgaataaagtcataaaatcctaatttttaagatttaagtcgggattatgacaacaat 69  Q
    |||| ||||||  |||||||| | ||||| |||||||||||||||| ||||||||||    
T  44944922 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 44944978  T

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